Browse Element(s) Details


OsAffx.3925.1.S1_at

Description tigr:9632.m02651
TID=OsAffx.3925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2810011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3925.1.S1_at--159--8911Chr04:16403723..16403747 (25 bp)
TGAGAGCCATCGATGATCAGTCCCT
LOC_Os04g28100
OsAffx.3925.1.S1_at--285--411Chr04:16403708..16403732 (25 bp)
ATCAGTCCCTTGTTGAGGAGTCCTT
LOC_Os04g28100
OsAffx.3925.1.S1_at--188--8031Chr04:16403692..16403716 (25 bp)
GGAGTCCTTAGCTATACTTGCTTTG
LOC_Os04g28100
OsAffx.3925.1.S1_at--247--6071Chr04:16403631..16403655 (25 bp)
GAGTTCAACGGTACCGCTTCCATGC
LOC_Os04g28100
OsAffx.3925.1.S1_at--478--3631Chr04:16403615..16403639 (25 bp)
CTTCCATGCTCCGTTCGATAAGGGA
LOC_Os04g28100
OsAffx.3925.1.S1_at--566--7851Chr04:16403557..16403581 (25 bp)
GGTAGTTCTCTTCGCTATATGTACA
LOC_Os04g28100
OsAffx.3925.1.S1_at--634--10311Chr04:16403472..16403496 (25 bp)
TTTCTCGCACAAACTGGCACTCAAA
LOC_Os04g28100
OsAffx.3925.1.S1_at--566--51Chr04:16403387..16403411 (25 bp)
ATTGTTCATGTTAGCTCCAGCAACG
LOC_Os04g28100
OsAffx.3925.1.S1_at--99--251Chr04:16403294..16403318 (25 bp)
ATATAGCTATTTTCCTTTTTCAGTA
LOC_Os04g28100
OsAffx.3925.1.S1_at--915--6051Chr04:16403234..16403258 (25 bp)
GAGTTTTTACTCGTTGGTCCTGCCT
LOC_Os04g28100
OsAffx.3925.1.S1_at--96--3831Chr04:16403215..16403239 (25 bp)
CTGCCTGTTTTTGGAATCTTGGTCA
LOC_Os04g28100
Target Sequence 
TGAGAGCCATCGATGATCAGTCCCTTGTTGAGGAGTCCTTAGCTATACTTGCTTTGCTATCAAGAAATCAAGAGATGGTG
GAGATCATCACCGAGTTCAACGGTACCGCTTCCATGCTCCGTTCGATAAGGGAGAGTGAGTGCAAGCGCAGCAAAGAGAA
CGCGATGGTAGTTCTCTTCGCTATATGTACATACAACAGGACAAAGCTGAAGGAGGTCGAGGCAGATGAGAGCATAAACG
GCTCCCTCACTTTTCTCGCACAAACTGGCACTCAAAGGGCAAGGAGGAAAGCTTCTGGGATCCTTGAGAAGATGAAGAGG
ACGATGCACAATAGGCATTGTTCATGTTAGCTCCAGCAACGAAGATGAAGCTGGAGGAACGATGAACAATGCATGAGGAT
GCTCATTTGATGTATATGTTGAGATACATATATAGCTATTTTCCTTTTTCAGTATATAGGAGATCCGCATATGCATAGAT
AATAGTAAAGAGTTTTTACTCGTTGGTCCTGCCTGTTTTTGGAATCTTGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis