Browse Element(s) Details


OsAffx.26194.1.S1_at

Description tigr:9632.m02648
TID=OsAffx.26194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2807411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26194.1.S1_at--291--9011Chr04:16386568..16386592 (25 bp)
TGCAAGAAACCGGTCGTGGCACCAA
LOC_Os04g28074
OsAffx.26194.1.S1_at--575--7531Chr04:16386583..16386607 (25 bp)
GTGGCACCAACGATTGCCCTATGTC
LOC_Os04g28074
OsAffx.26194.1.S1_at--1154--4531Chr04:16386598..16386622 (25 bp)
GCCCTATGTCTTTCCAACCAAAGAG
LOC_Os04g28074
OsAffx.26194.1.S1_at--838--2771Chr04:16386618..16386642 (25 bp)
AAGAGATCGAAGACTTGCTGCAAAA
LOC_Os04g28074
OsAffx.26194.1.S1_at--585--411Chr04:16386656..16386680 (25 bp)
ATCATGATGAATGCTTTGCCGAGGA
LOC_Os04g28074
OsAffx.26194.1.S1_at--587--2251Chr04:16387976..16388000 (25 bp)
AAATTTGTGCGGAATCTTGCATGGA
LOC_Os04g28074
OsAffx.26194.1.S1_at--488--651Chr04:16388395..16388415 (21 bp)
ATGCAGACATGTTACGACACCAACG
LOC_Os04g28074
OsAffx.26194.1.S1_at--705--10391Chr04:16388424..16388448 (25 bp)
TTCTTGATCCGCCACTGGTTGGAGA
LOC_Os04g28074
OsAffx.26194.1.S1_at--737--10851Chr04:16388442..16388466 (25 bp)
TTGGAGACCGCGCTCGCCTATGACG
LOC_Os04g28074
OsAffx.26194.1.S1_at--648--3971Chr04:16388555..16388579 (25 bp)
CGTGGTGATGCCCTATGCAGCTCCA
LOC_Os04g28074
OsAffx.26194.1.S1_at--565--3991Chr04:16388657..16388681 (25 bp)
CGTGGAGTTGACAAGCCTACTATAT
LOC_Os04g28074
Target Sequence 
TGCAAGAAACCGGTCGTGGCACCAACGATTGCCCTATGTCTTTCCAACCAAAGAGATCGAAGACTTGCTGCAAAAGTTAG
ATCAAAATATCATGATGAATGCTTTGCCGAGGAAGATGGATTTGTATTTGGACTTGAAATTTGTGCGGAATCTTGCATGG
AAAATGCAGACATGTTACGACACCAACGAATCGATTTTCTTGATCCGCCACTGGTTGGAGACCGCGCTCGCCTATGACGC
CGTCTCGCGCAGGCTCTACGGCCTCAACGCCAAGGCCAACTTCGCCGCCCGCGAAGACCTCCCTCCGCTGCCGCTGGCGC
CGGCACCCGTGGTGATGCCCTATGCAGCTCCACCAAAGCGGCCAAAGAAATGCAACACCGCCATGGCGCCGCCGCAAGCC
GTGGATACTCCGGCGACGGCAGCAGGTGGCGTGGAGTTGACAAGCCTACTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis