Browse Element(s) Details


OsAffx.23801.2.S1_s_at

Description tigr:9629.m05415
TID=OsAffx.23801.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g281001/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23801.2.S1_s_at--485--4591Chr01:32277475..32277499 (25 bp)
GCGACGCCGGCATTTTCCGTTTTGT
NONE
OsAffx.23801.2.S1_s_at--371--4231Chr01:32277459..32277483 (25 bp)
CCGTTTTGTTTATGCTATCTGGACT
NONE
OsAffx.23801.2.S1_s_at--714--9071Chr01:32277447..32277471 (25 bp)
TGCTATCTGGACTGGAGCATCAAGT
NONE
OsAffx.23801.2.S1_s_at--249--5931NONE
GAGCATCAAGTACGGCCAAACATTC
NONE
OsAffx.23801.2.S1_s_at--139--8451NONE
GGCCAAACATTCAGCATTGTACTAT
NONE
OsAffx.23801.2.S1_s_at--670--3591Chr01:32276758..32276782 (25 bp)
CATTCAGCATTGTACTATCGTGTTA
NONE
OsAffx.23801.2.S1_s_at--432--10531Chr01:32276756..32276780 (25 bp)
TTCAGCATTGTACTATCGTGTTATA
NONE
OsAffx.23801.2.S1_s_at--350--1551Chr01:32276753..32276777 (25 bp)
AGCATTGTACTATCGTGTTATAGAC
NONE
OsAffx.23801.2.S1_s_at--244--7011Chr01:32276747..32276771 (25 bp)
GTACTATCGTGTTATAGACATTCAA
NONE
OsAffx.23801.2.S1_s_at--167--9411Chr01:32276741..32276765 (25 bp)
TCGTGTTATAGACATTCAATATTTG
NONE
OsAffx.23801.2.S1_s_at--127--3112Chr04:16404223..16404268 (24 bp)
AATATTTGTCAAAATGGACGGAAGA
LOC_Os04g28100
Target Sequence
GCGACGCCGGCATTTTCCGTTTTGTTTATGCTATCTGGACTGGAGCATCAAGTACGGCCAAACATTCAGCATTGTACTAT
CGTGTTATAGACATTCAATATTTGTCAAAATGGACGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23801.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis