Browse Element(s) Details


Os.23483.1.A1_s_at

Description gb:CA759716
DB_XREF= gi:25803755
DB_XREF=BR060008B20D06.ab1
CLONE=BR060008B20D06.ab1
TID=Os.23483.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23483 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2813011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23483.1.A1_s_at--655--7131Chr04:16429916..16429940 (25 bp)
GTCATCACGTGTGCCGCAACGCAAG
LOC_Os04g28130
Os.23483.1.A1_s_at--900--6671Chr04:16429955..16429979 (25 bp)
GTTCCAACACTCAACCTACAGAAAC
LOC_Os04g28130
Os.23483.1.A1_s_at--967--5111Chr04:16430099..16430123 (25 bp)
GCAAATCCTCTCTGAAGACGCTGAA
LOC_Os04g28130
Os.23483.1.A1_s_at--981--5211Chr04:16430121..16430145 (25 bp)
GAATATGACGATGTTTACGCCGCGA
LOC_Os04g28130
Os.23483.1.A1_s_at--20--5871Chr04:16430152..16430176 (25 bp)
GAGCCTTACAGTATGGGATTGTCTT
LOC_Os04g28130
Os.23483.1.A1_s_at--242--1551Chr04:16430188..16430212 (25 bp)
AGCATTCCAGTGATCCTTCTGGTGA
LOC_Os04g28130
Os.23483.1.A1_s_at--1101--6671Chr04:16430301..16430325 (25 bp)
GTTGCTGCTGTTGTCACTAAACCAT
LOC_Os04g28130
Os.23483.1.A1_s_at--99--8271Chr04:16430402..16430426 (25 bp)
GGCAGCAGTTTTCCGCCTTGTGGAT
LOC_Os04g28130
Os.23483.1.A1_s_at--1022--1391Chr04:16430449..16430473 (25 bp)
AGACAGAGGCATCGGTCTGCTGCAA
LOC_Os04g28130
Os.23483.1.A1_s_at--1077--9431Chr04:16430460..16430484 (25 bp)
TCGGTCTGCTGCAATCTACTACTAA
LOC_Os04g28130
Os.23483.1.A1_s_at--278--1231Chr04:16430552..16430576 (25 bp)
AGTTCATTATATACCTGTCCTTCAT
LOC_Os04g28130
Target Sequence 
GTCATCACGTGTGCCGCAACGCAAGTACACTGCAGCCTCGTTCCAACACTCAACCTACAGAAACAACCATGCAAATCCTC
TCTGAAGACGCTGAATATGACGATGTTTACGCCGCGACGCGAAGAGCCTTACAGTATGGGATTGTCTTTGATGAGTCCAA
GCATTCCAGTGATCCTTCTGGTGATGAGGATGAACAAGTTGTGGTAGGAGGAGATCAAGATGGATGTGCCAATGAAGCCA
ATGACATAGACTCATCTGGTGATCATCATCAGGTTGCTGCTGTTGTCACTAAACCATGCAACGCAAATGCTTCACAAGAG
ATAATCAACAAGATGACTAATTCTGATGGTATGCAAGCCACCAAAGGAAGCAAGGCAGCAGTTTTCCGCCTTGTGGATTA
TTCAGAATCCGATAGCGATTAGACAGAGGCATCGGTCTGCTGCAATCTACTACTAATTGGTCGTAGTTGCAGCAGTAATT
AGTAGCCTTCTAATAATAATAATGATGGCCAATTGCATATGGCAGTTCATTATATACCTGTCCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23483.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis