Browse Element(s) Details


OsAffx.3926.1.S1_at

Description tigr:9632.m02656
TID=OsAffx.3926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2815011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3926.1.S1_at--235--2231Chr04:16439175..16439199 (25 bp)
ACAAGGGCACCACTGATTGCAATCA
LOC_Os04g28150
OsAffx.3926.1.S1_at--162--6751Chr04:16439213..16439697 (25 bp)
GTTCATCAGATGCAAGTCCTCAATG
LOC_Os04g28150
OsAffx.3926.1.S1_at--675--9851Chr04:16439709..16439733 (25 bp)
TACACCGCTATGAGAAGATCCTTGC
LOC_Os04g28150
OsAffx.3926.1.S1_at--466--6371Chr04:16439725..16439749 (25 bp)
GATCCTTGCATCTTGGGACTATCTT
LOC_Os04g28150
OsAffx.3926.1.S1_at--146--2531Chr04:16439760..16439784 (25 bp)
AACTATTCCAATGATCCTTGCAGCA
LOC_Os04g28150
OsAffx.3926.1.S1_at--407--3031Chr04:16439841..16439865 (25 bp)
AATGCCACACACTCATCTGATGATC
LOC_Os04g28150
OsAffx.3926.1.S1_at--799--10791Chr04:16439872..16439896 (25 bp)
TTGTTGTTCCTGATCTATCCTGCAA
LOC_Os04g28150
OsAffx.3926.1.S1_at--935--891Chr04:16439932..16439956 (25 bp)
AGGCTACTACTTGTGTTGATCATCG
LOC_Os04g28150
OsAffx.3926.1.S1_at--844--5371Chr04:16439957..16439981 (25 bp)
GAAGCAAGACACCACACGAACTGAT
LOC_Os04g28150
OsAffx.3926.1.S1_at--88--4851Chr04:16440015..16440039 (25 bp)
GCTACATTCTCAACTGGTAACCTGC
LOC_Os04g28150
OsAffx.3926.1.S1_at--595--331Chr04:16440100..16440124 (25 bp)
ATACTTGTGATGACCAGCATGCCCC
LOC_Os04g28150
Target Sequence 
ACAAGGGCACCACTGATTGCAATCAAATTGCTACTCATGTTCATCAGATGCAAGTCCTCAATGGAGATGATGTTTACACC
GCTATGAGAAGATCCTTGCATCTTGGGACTATCTTTGATGAGTCCAACTATTCCAATGATCCTTGCAGCAATGAATATAA
AGTTGGAGAAGATGAGATTGGAGGTTATGGCTGTGCCAATGAGGCAAATGCCACACACTCATCTGATGATCACAATGTTG
TTGTTCCTGATCTATCCTGCAATATAGCAGATGATGTTTCACAGGAGATTATGAGCAAGGCTACTACTTGTGTTGATCAT
CGGAAGCAAGACACCACACGAACTGATGGGCCAGCAGCTATGAGTGCTGATGAAGCTAATGCTACATTCTCAACTGGTAA
CCTGCAGCAGGTTAATGTCATTGTGACCTGCAATGGAGATGGTTCACAAGAGAGCATACAGAAGAATACTTGTGATGACC
AGCATGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis