Browse Element(s) Details


Os.11541.1.S1_at

Description gb:AK068316.1
DB_XREF= gi:32978334
TID=Os.11541.1
CNT=88
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151C04, full insert sequence.
FL= gb:AK068316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2818011/1140S ribosomal protein S8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11541.1.S1_at--795--8971Chr04:16458970..16458994 (25 bp)
TGAAAAGCGTCAGCAAACTCGCACT
LOC_Os04g28180
Os.11541.1.S1_at--1081--3111Chr04:16458923..16458947 (25 bp)
AATTTGGCAGCGGAAGGCTCTTGGC
LOC_Os04g28180
Os.11541.1.S1_at--990--1071Chr04:16458638..16458662 (25 bp)
AGGGCAAAGAGCTTGAGTTCTACAT
LOC_Os04g28180
Os.11541.1.S1_at--1006--2871Chr04:16458588..16458612 (25 bp)
AAGGGTGCTGCAGCTTAGAGCGTTC
LOC_Os04g28180
Os.11541.1.S1_at--840--10031Chr04:16458573..16458597 (25 bp)
TAGAGCGTTCTCTCGAGTGTGTTTT
LOC_Os04g28180
Os.11541.1.S1_at--887--10271Chr04:16458501..16458525 (25 bp)
TTTGCGTCTATGTCGTGCCTACAGA
LOC_Os04g28180
Os.11541.1.S1_at--230--1371Chr04:16458479..16458503 (25 bp)
AGACCCTACTGAACACCAATTTTCT
LOC_Os04g28180
Os.11541.1.S1_at--844--6311Chr04:16458446..16458470 (25 bp)
GATGAATCAACTCTTAGCTTGGAAG
LOC_Os04g28180
Os.11541.1.S1_at--514--4871Chr04:16458397..16458421 (25 bp)
GCTATGGTTGTATTCTCGTGGTATT
LOC_Os04g28180
Os.11541.1.S1_at--1011--6871Chr04:16458377..16458401 (25 bp)
GTATTTAGGTTCCATGTGTACTCAG
LOC_Os04g28180
Os.11541.1.S1_at--430--3871Chr04:16458342..16458366 (25 bp)
CTGTTATGTTTTATGCCCTTCCAAG
LOC_Os04g28180
Target Sequence 
TGAAAAGCGTCAGCAAACTCGCACTNCTGGACTCGCACATTGAAGAGCAATTTGGCAGCGGAAGGCTCTTGGCCTGCATC
TCCTCCCGGCCTGGGCAATGTGGCAGAGCTGATGGGTACATCCTGGAGGGCAAAGAGCTTGAGTTCTACATGAAGAAGCT
CCAGAGGAAGAAGGGCAAGGGTGCTGCAGCTTAGAGCGTTCTCTCGAGTGTGTTTTACGCTGGAAGGCCCGCCTATTTTA
TTCAGTGGATTTTGTTAGTCATGTTTGCGTCTATGTCGTGCCTACAGACCCTACTGAACACCAATTTTCTGAAAGAATGA
TGAATCAACTCTTAGCTTGGAAGAANTNATTGTGAGAATTTTCACATGCTATGGTTGTATTCTCGTGGTATTTAGGTTCC
ATGTGTACTCAGNTACAGCATTCTGTTATGTTTTATGCCCTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis