Browse Element(s) Details


OsAffx.26197.1.S1_at

Description tigr:9632.m02655
TID=OsAffx.26197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g281408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26197.1.S1_at--108--2871Chr04:16433956..16433980 (25 bp)
AAGTGTCATGCCAACTCTACAAGAG
NONE
OsAffx.26197.1.S1_at--1031--2771Chr04:16433976..16434000 (25 bp)
AAGAGCTATGCTCTCTAGCCTCAAC
NONE
OsAffx.26197.1.S1_at--19--3771Chr04:16433986..16434007 (22 bp)
CTCTCTAGCCTCAACTTTCATGAAT
NONE
OsAffx.26197.1.S1_at--711--3011Chr04:16434521..16434545 (25 bp)
AATGCACAAGACATTGTCGTAGTCT
LOC_Os04g28140
OsAffx.26197.1.S1_at--631--7871Chr04:16434575..16434599 (25 bp)
GGTTTAAAGTTCCTTGAAGCTGCAA
LOC_Os04g28140
OsAffx.26197.1.S1_at--822--5551Chr04:16434759..16434783 (25 bp)
GAAACCACAAGGTTGTACACAATGA
LOC_Os04g28140
OsAffx.26197.1.S1_at--996--5371Chr04:16434818..16434842 (25 bp)
GAAGAAGCCTCCTAACGAAGACATT
LOC_Os04g28140
OsAffx.26197.1.S1_at--204--4471Chr04:16434824..16434848 (25 bp)
GCCTCCTAACGAAGACATTGTACAT
LOC_Os04g28140
OsAffx.26197.1.S1_at--1000--1531Chr04:16434859..16434883 (25 bp)
AGCATATTGCCCTGAAAGTTCTGAT
LOC_Os04g28140
OsAffx.26197.1.S1_at--544--7611Chr04:16434898..16434922 (25 bp)
GGGAATTACTGCAAGGATGCACCAT
LOC_Os04g28140
OsAffx.26197.1.S1_at--217--5191Chr04:16434908..16434932 (25 bp)
GCAAGGATGCACCATATATGTTAAT
LOC_Os04g28140
Target Sequence 
AAGTGTCATGCCAACTCTACAAGAGCTATGCTCTCTAGCCTCAACTTTCATGAATAATGCACAAGACATTGTCGTAGTCT
TGGCAACAGTGGACGTGAAACAATTGAGTGGTTTAAAGTTCCTTGAAGCTGCAAGAATGAAACATCAAGACCTTCAAGTG
ATCATGATGTCAGCTGAAACCACAAGGTTGTACACAATGATGAGGTGTGTTAAACTCGCTGCACGTTTTCTAGTGAAGAA
GCCTCCTAACGAAGACATTGTACATGATCTGTGGCAGCATATTGCCCTGAAAGTTCTGATGATGGAGAAGATCAGGGAAT
TACTGCAAGGATGCACCATATATGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis