Browse Element(s) Details


Os.10202.1.S1_at

Description gb:AK112077.1
DB_XREF= gi:37988740
TID=Os.10202.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B04, full insert sequence.
FL= gb:AK112077.1 gb:AK102248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2809011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10202.1.S1_at--592--6291Chr04:16399199..16399223 (25 bp)
GATGAATTCGTAGGTCCGATTCCCC
LOC_Os04g28090
Os.10202.1.S1_at--533--1431Chr04:16399269..16399293 (25 bp)
AGAACTCTAGCTCGCAGAGCGGTGA
LOC_Os04g28090
Os.10202.1.S1_at--525--5891Chr04:16399285..16399309 (25 bp)
GAGCGGTGATACTGCTACCACGGAA
LOC_Os04g28090
Os.10202.1.S1_at--139--991Chr04:16399345..16399369 (25 bp)
AGGAGGTCAGGATCACATCGACAGC
LOC_Os04g28090
Os.10202.1.S1_at--393--711Chr04:16399404..16399428 (25 bp)
ATGATGGAAGTGCTGCTGCATCTTC
LOC_Os04g28090
Os.10202.1.S1_at--925--7131Chr04:16399478..16399502 (25 bp)
GTCATTTCTTGTACTTCATCTTCGA
LOC_Os04g28090
Os.10202.1.S1_at--984--51Chr04:16399563..16399587 (25 bp)
ATTGAATGTCCAAAGCTGTGCACTG
LOC_Os04g28090
Os.10202.1.S1_at--917--7331Chr04:16399580..16399604 (25 bp)
GTGCACTGAATTTTTATTCGCTGCT
LOC_Os04g28090
Os.10202.1.S1_at--79--611Chr04:16399626..16399650 (25 bp)
ATGCGGGACTAAGCTTGTTGTACAA
LOC_Os04g28090
Os.10202.1.S1_at--1126--7071Chr04:16399661..16399685 (25 bp)
GTCAATTCCCATTGAGGACTCTCAG
LOC_Os04g28090
Os.10202.1.S1_at--413--6191Chr04:16399674..16399698 (25 bp)
GAGGACTCTCAGCTCTTAGAATTGC
LOC_Os04g28090
Target Sequence 
GATGAATTCGTAGGTCCGATTCCCCCAGGACCAGGTACTCAAGGTGACGACAATGTGGTGGCGGTCGAAGAGAACTCTAG
CTCGCAGAGCGGTGATACTGCTACCACGGAAGATGGATCTTGTGGCATGATCGACGCATCAAAATCAGGAGGTCAGGATC
ACATCGACAGCAAGGATGAACTTCCCACNTGTTGGTGCCAGTCTAGATGATGGAAGTGCTGCTGCATCTTCTGATCAAGA
TGTCTCAACTGAGGTGAATGCCACNTGTCCCTGAATAGAATGTCATTTCTTGTACTTCATCTTCGAGGGCGGCACAGAGA
AAGCTAAGAGGGACGGATACCTTGAGAGAAAAAAAANGAAGAGGCAAATTGAATGTCCAAAGCTGTGCACTGAATTTTTA
TTCGCTGCTTGATTGTTAGTGAACGACAAAATGCGGGACTAAGCTTGTTGTACAATGTTAATTTTGTCAATTCCCATTGA
GGACTCTCAGCTCTTAGAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis