Browse Element(s) Details

Os.46819.2.S1_x_at

Description

gb:NM_196598.1
DB_XREF= gi:37534555
TID=Os.46819.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46819 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.8), mRNA.
PROD=putative speckle-type protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g29220	11/11	BTB/POZ domain containing protein, expressed
LOC_Os10g29190	1/11	BTB/POZ domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g29170	Os.46399.1.A1_at	10/11	10	+	14861610..14865185	hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170	OsAffx.15781.5.S1_x_at	3/11	10	+	14861610..14865185	hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170	OsAffx.15781.4.S1_x_at	2/11	10	+	14861610..14865185	hAT family dimerisation domain containing protein, expressed
LOC_Os10g29180	Os.46505.1.S1_at	11/11	10	+	14870042..14872768	BTB/POZ domain containing protein, expressed
LOC_Os10g29180	Os.46505.3.S1_x_at	11/11	10	+	14870042..14872768	BTB/POZ domain containing protein, expressed
LOC_Os10g29180	Os.46505.2.S1_x_at	11/11	10	+	14870042..14872768	BTB/POZ domain containing protein, expressed
LOC_Os10g29180	Os.46505.2.S1_at	11/11	10	+	14870042..14872768	BTB/POZ domain containing protein, expressed
LOC_Os10g29190	Os.46819.2.S1_x_at	1/11	10	+	14875669..14876711	BTB/POZ domain containing protein
LOC_Os10g29210	NA	NA	10	+	14879865..14881141	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220	Os.46819.2.S1_x_at	11/11	10	+	14884294..14885732	BTB/POZ domain containing protein, expressed
LOC_Os10g29220	Os.46819.1.S1_at	11/11	10	+	14884294..14885732	BTB/POZ domain containing protein, expressed
LOC_Os10g29230	NA	NA	10	+	14888861..14889970	BTB/POZ domain containing protein, expressed
LOC_Os10g29240	Os.35837.2.S1_x_at	11/11	10	+	14891416..14893725	expressed protein
LOC_Os10g29240	OsAffx.16386.1.S1_x_at	4/11	10	+	14891416..14893725	expressed protein
LOC_Os10g29240	OsAffx.16386.1.S1_at	3/11	10	+	14891416..14893725	expressed protein
LOC_Os10g29250	OsAffx.20323.1.S1_at	11/11	10	+	14895253..14895597	hypothetical protein
LOC_Os10g29260	OsAffx.30584.1.S1_at	11/11	10	+	14898764..14899728	BTB/POZ domain containing protein
LOC_Os10g29260	OsAffx.30585.1.S1_at	1/11	10	+	14898764..14899728	BTB/POZ domain containing protein
LOC_Os10g29274	Os.46319.1.S1_s_at	11/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29274	Os.26733.3.S1_x_at	11/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29274	Os.26733.2.S1_x_at	11/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29274	Os.26733.1.S1_at	7/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29274	OsAffx.5828.1.S1_x_at	3/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29274	Os.52575.1.S1_x_at	2/11	10	+	14900075..14905198	expressed protein
LOC_Os10g29290	OsAffx.18441.1.S1_at	11/11	10	+	14910306..14911397	BTB/POZ domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46819.2.S1_x_at--581--809	1	Chr10:14885163..14885187 (25 bp)	GGACGAAGGCATCATGTGCCAGCAT	LOC_Os10g29220
Os.46819.2.S1_x_at--640--517	1	Chr10:14885252..14885276 (25 bp)	GCAAGCACATTAGCACGGGCACGGT	LOC_Os10g29220
Os.46819.2.S1_x_at--962--191	1	Chr10:14885266..14885290 (25 bp)	ACGGGCACGGTGTCGAACATGCTGT	LOC_Os10g29220
Os.46819.2.S1_x_at--492--411	1	Chr10:14885279..14885303 (25 bp)	CGAACATGCTGTTGCTGGCTGATCA	LOC_Os10g29220
Os.46819.2.S1_x_at--429--731	2	Chr10:14885331..14885355 (25 bp)	GTGCTGCAATTTTCTCGGCTCATCG	LOC_Os10g29220
Os.46819.2.S1_x_at--764--961	1	Chr10:14885350..14885374 (25 bp)	TCATCGGCGAACCTGAGTCCTGTCA	LOC_Os10g29220
Os.46819.2.S1_x_at--1070--757	1	Chr10:14885379..14885403 (25 bp)	GGGCTGGCTCTTTGTTATGAAACAG	LOC_Os10g29220
Os.46819.2.S1_x_at--928--1041	2	Chr10:14885410..14885527 (25 bp)	TTAGGATGCTGCAATGCATGGAGAC	LOC_Os10g29220
Os.46819.2.S1_x_at--868--349	1	Chr10:14885519..14885543 (25 bp)	CATGGAGACTTGCTGTTGTACACCC	LOC_Os10g29220
Os.46819.2.S1_x_at--260--873	1	Chr10:14885544..14885568 (25 bp)	TGTCTCGGTGTCTTGGCTTGTACTA	LOC_Os10g29220
Os.46819.2.S1_x_at--665--827	1	Chr10:14885558..14885582 (25 bp)	GGCTTGTACTATCACTATCAGGCAG	LOC_Os10g29220

Target Sequence

GGACGAAGGCATCATGTGCCAGCATCTGCTCGTCGCGGCGGATCGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGG
AGAAGCTGTGCAAGCACATTAGCACGGGCACGGTGTCGAACATGCTGTTGCTGGCTGATCAGCACCACTGCTCCGGGCTG
CAGAAAGCGTGCTGCAATTTTCTCGGCTCATCGGCGAACCTGAGTCCTGTCAGCAGGGGCTGGCTCTTTGTTATGAAACA
GCTTGTGTTAGGATGCTGCAATGCATGGAGACTTGCTGTTGTACACCCTGTCTCGGTGTCTTGGCTTGTACTATCACTAT
CAGGCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis