Browse Element(s) Details


Os.53767.1.A1_at

Description gb:AK099822.1
DB_XREF= gi:32985031
TID=Os.53767.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101J07, full insert sequence.
FL= gb:AK099822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4499011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003723molecular_functionRNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53767.1.A1_at--407--10831Chr01:25851980..25852004 (25 bp)
TTGGGCATTCAAGATCTCAGCACCG
LOC_Os01g44990
Os.53767.1.A1_at--977--1791Chr01:25851959..25851983 (25 bp)
ACCGCCGATCGCTTTCAGATAGTTG
LOC_Os01g44990
Os.53767.1.A1_at--305--5071Chr01:25851380..25851404 (25 bp)
GCAGCTCATGACTCTGGAGCCAATG
LOC_Os01g44990
Os.53767.1.A1_at--647--8091Chr01:25851365..25851389 (25 bp)
GGAGCCAATGTTCTTCGACAAATGA
LOC_Os01g44990
Os.53767.1.A1_at--1132--6031Chr01:25851326..25851350 (25 bp)
GAGATTTCTGAACTAACATCACAAG
LOC_Os01g44990
Os.53767.1.A1_at--475--2391Chr01:25851258..25851282 (25 bp)
AAACTGCTGAAGAACTCGCGCCAAG
LOC_Os01g44990
Os.53767.1.A1_at--316--9331Chr01:25851243..25851267 (25 bp)
TCGCGCCAAGTGAAATCTGCCAGTA
LOC_Os01g44990
Os.53767.1.A1_at--790--10351Chr01:25851214..25851238 (25 bp)
TTTATTGTTGTCTTCCTTTTGCTTT
LOC_Os01g44990
Os.53767.1.A1_at--159--10011Chr01:25851129..25851153 (25 bp)
TAGAAATTGGTGCTCCAGGATGCAA
LOC_Os01g44990
Os.53767.1.A1_at--113--7811Chr01:25851089..25851113 (25 bp)
GGTCGATTGACTTTTTACTCTCTGT
LOC_Os01g44990
Os.53767.1.A1_at--825--3891Chr01:25851062..25851086 (25 bp)
CTGTGTCTCAGTTTGCTTTTTGGTT
LOC_Os01g44990
Target Sequence 
TTGGGCATTCAAGATCTCAGCACCGCCGATCGCTTTCAGATAGTTGCATAGATTGGTCTGAGTTAGCAGTGAATCCAAAA
GCAAAACCTGTTAGAAATACATCATTCAGAGTTGAAAAAGTTGAAGTAGACCGGACTGTGAAAATTGAAGCTAAAAGGGC
TGAGCTAGAATGCAAGACTAAGTTGTATGAACATATCAAGGAAGCAGCTCATGACTCTGGAGCCAATGTTCTTCGACAAA
TGAAGGCTATTGAAAAAGAGATTTCTGAACTAACATCACAAGAAGAGATAGAAGAAAAGAAAAGGAAAGGGGGTTAGCGA
TGGTCAAACTGCTGAAGAACTCGCGCCAAGTGAAATCTGCCAGTAGACATTTATTGTTGTCTTCCTTTTGCTTTTTTTTG
GGGTTCAGGTTTGTATTGCTGTAGAAGCTGGCGATGATGTAGAATTTGTGCCAGTAGAAATTGGTGCTCCAGGATGCAAA
CAACAAAGTTCATTGGTCGATTGACTTTTTACTCTCTGTGTCTGTGTCTCAGTTTGCTTTTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53767.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis