Browse Element(s) Details


Os.7269.1.S1_s_at

Description gb:CF326526
DB_XREF= gi:33801307
DB_XREF=JMT1--06-E21.g1
CLONE=JMT1--06-E21
TID=Os.7269.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.7269 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565437.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4496011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7269.1.S1_s_at--40--7091Chr01:25830400..25830424 (25 bp)
GTCAAGGGACTCAAGGCGCTGCTCT
LOC_Os01g44960
Os.7269.1.S1_s_at--121--91Chr01:25830373..25830397 (25 bp)
ATTGCCACCCACAGGAAGCTCTGGT
LOC_Os01g44960
Os.7269.1.S1_s_at--323--4951Chr01:25830339..25830363 (25 bp)
GCATTCACAGAGACTACCTCGAGGT
LOC_Os01g44960
Os.7269.1.S1_s_at--841--7391Chr01:25830166..25830190 (25 bp)
GTGATGTTCACCAACCGAAAGGAAA
LOC_Os01g44960
Os.7269.1.S1_s_at--774--8591Chr01:25830117..25830141 (25 bp)
TGGTCAGCAACAAAGACGCCACCGT
LOC_Os01g44960
Os.7269.1.S1_s_at--749--10311Chr01:25829210..25829234 (25 bp)
TTTCAACATTGAGCTCGCCATGACG
LOC_Os01g44960
Os.7269.1.S1_s_at--560--3211Chr01:25829033..25829057 (25 bp)
CAAGGCAGGGCACCTGGTTCACATA
LOC_Os01g44960
Os.7269.1.S1_s_at--1081--8571Chr01:25829019..25829043 (25 bp)
TGGTTCACATAGAGAGGCCCTGCGT
LOC_Os01g44960
Os.7269.1.S1_s_at--872--9511Chr01:25828995..25829019 (25 bp)
TCTACAACCAGCACCTCAAGGAGTT
LOC_Os01g44960
Os.7269.1.S1_s_at--1038--971Chr01:25828941..25828965 (25 bp)
AGGAGACCGCCTGATTTGCTCTGAA
LOC_Os01g44960
Os.7269.1.S1_s_at--826--2411Chr01:25828841..25828865 (25 bp)
AAAAACGCTTGTGCCTGGATTGAGA
LOC_Os01g44960
Target Sequence 
GTCAAGGGACTCAAGGCGCTGCTCTCCATTGCCACCCACAGGAAGCTCTGGTTCCCTGACCGCATTCACAGAGACTACCT
CGAGGTGATGTTCACCAACCGAAAGGAAAGAGCCGAGCTGCTGGAAGGTTTGGTGGTCAGCAACAAAGACGCCACCGTNC
CCGTTCTGCCGCAGAAAATACTCCTGCTATGGGGGGAGAACGACNACATTTTCAACATTGAGCTCGCCATGACGATGAAA
GAGCAGCTCGGAGAGAAGGCAATGCTGCAGAGCATCAGCAAGGCAGGGCACCTGGTTCACATAGAGAGGCCCTGCGTCTA
CAACCAGCACCTCAAGGAGTTCCTCGCGTACGTCAACGCTGAATCCCCCAAGGAGACCGCCTGATTTGCTCTGAAGAATT
GGAGTTCCACGNTCCTGAACTTTGTATTGGTTTGTTTTAGTTTGAAAAGACAAANANGTTCACGAACCGTAAAAACGCTT
GTGCCTGGATTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7269.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis