Browse Element(s) Details


Os.27933.2.S1_s_at

Description gb:NM_192241.1
DB_XREF= gi:34911565
GEN=P0004A09.5
TID=Os.27933.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27933 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peptide deformylase (P0004A09.5), mRNA.
PROD=putative peptide deformylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4507011/11Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g4498011/11peptide deformylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45040Os.26733.3.S1_x_at5/111+25890095..25893854hypothetical protein
LOC_Os01g45040Os.53731.1.S1_at2/111+25890095..25893854hypothetical protein
LOC_Os01g45050Os.27639.1.S1_x_at8/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050OsAffx.8980.1.S1_at6/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050Os.53731.1.S1_at2/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45060Os.48563.1.S1_x_at10/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45060Os.48563.1.S1_s_at4/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45070Os.27933.2.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070OsAffx.23659.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.2.S1_s_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45080OsAffx.23662.2.S1_at11/111+25917137..25917585hypothetical protein
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001718biological_processconversion of met-tRNAf to fmet-tRNA
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0042586molecular_functionpeptide deformylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27933.2.S1_s_at--288--9932Chr01:25915562..25915586 (25 bp)
TACGGGCTCGCAACAAGCGCATCAA
LOC_Os01g45070
Os.27933.2.S1_s_at--668--1972Chr01:25915015..25915039 (25 bp)
ACTGATGGAATTGGTCTCTCTGCAC
LOC_Os01g45070
Os.27933.2.S1_s_at--974--8592Chr01:25915004..25915028 (25 bp)
TGGTCTCTCTGCACCACAAGTTGGG
LOC_Os01g45070
Os.27933.2.S1_s_at--1076--972Chr01:25914927..25914951 (25 bp)
AGGAGATTGTCCTTGTCAACCCGGT
LOC_Os01g45070
Os.27933.2.S1_s_at--478--4772Chr01:25914861..25914885 (25 bp)
GCTGCTTATCATTCCCTGGGATATA
LOC_Os01g45070
Os.27933.2.S1_s_at--382--3132Chr01:25914012..25914036 (25 bp)
AATTGATGCTCAGGATGTTACAGGG
LOC_Os01g45070
Os.27933.2.S1_s_at--309--6772Chr01:25913975..25913999 (25 bp)
GTTAAATTGTCAGGTCTGTCTGCAA
LOC_Os01g45070
Os.27933.2.S1_s_at--172--7192Chr01:25913962..25913986 (25 bp)
GTCTGTCTGCAAGAGTTTTCCAACA
LOC_Os01g45070
Os.27933.2.S1_s_at--138--7672Chr01:25913551..25913575 (25 bp)
GGGATTCTTTTCTTTGACAGGATGT
LOC_Os01g45070
Os.27933.2.S1_s_at--1015--5652Chr01:25913536..25913560 (25 bp)
GACAGGATGTCTCTTGATGTTCTTG
LOC_Os01g45070
Os.27933.2.S1_s_at--868--10772Chr01:25913523..25913547 (25 bp)
TTGATGTTCTTGAGAGCGTGCGTGA
LOC_Os01g45070
Target Sequence 
TACGGGCTCGCAACAAGCGCATCAACACCTTCGATGACAACCTCCGCAGCCTCACTGATGAGATGTTCGACGTTATGTAC
AAGACTGATGGAATTGGTCTCTCTGCACCACAAGTTGGGGTGAATGTACAGCTTATGGTATTTAATCCAGCTGGTGTGAA
GGGAGAAGGAGAGGAGATTGTCCTTGTCAACCCGGTTGTATACAAAATGTCGAAGAGATTGTTAGTGTATGAGGAAGGCT
GCTTATCATTCCCTGGGATATATGCCAATGTGGTGAGACCAGACAATGTCAAAATTGATGCTCAGGATGTTACAGGGGCA
AAGATTAAAGTTAAATTGTCAGGTCTGTCTGCAAGAGTTTTCCAACATGAATTTGATCATTTACAGGGGATTCTTTTCTT
TGACAGGATGTCTCTTGATGTTCTTGAGAGCGTGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27933.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis