Browse Element(s) Details


OsAffx.23662.2.S1_at

Description tigr:9629.m04303
TID=OsAffx.23662.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45040Os.26733.3.S1_x_at5/111+25890095..25893854hypothetical protein
LOC_Os01g45040Os.53731.1.S1_at2/111+25890095..25893854hypothetical protein
LOC_Os01g45050Os.27639.1.S1_x_at8/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050OsAffx.8980.1.S1_at6/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050Os.53731.1.S1_at2/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45060Os.48563.1.S1_x_at10/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45060Os.48563.1.S1_s_at4/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45070Os.27933.2.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070OsAffx.23659.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.2.S1_s_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45080OsAffx.23662.2.S1_at11/111+25917137..25917585hypothetical protein
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23662.2.S1_at--279--8311Chr01:25917352..25917376 (25 bp)
GGCTAATCGGCGACGGGATGCCATC
LOC_Os01g45080
OsAffx.23662.2.S1_at--403--491Chr01:25917357..25917381 (25 bp)
ATCGGCGACGGGATGCCATCTATGC
LOC_Os01g45080
OsAffx.23662.2.S1_at--503--4431Chr01:25917380..25917404 (25 bp)
GCCATCCAGATACCAGTAACGCCTA
LOC_Os01g45080
OsAffx.23662.2.S1_at--576--571Chr01:25917383..25917407 (25 bp)
ATCCAGATACCAGTAACGCCTAATG
LOC_Os01g45080
OsAffx.23662.2.S1_at--677--1811Chr01:25917398..25917422 (25 bp)
ACGCCTAATGGAAACGTTGAGCTTA
LOC_Os01g45080
OsAffx.23662.2.S1_at--344--5551Chr01:25917408..25917432 (25 bp)
GAAACGTTGAGCTTACATGCCACGA
LOC_Os01g45080
OsAffx.23662.2.S1_at--984--10751Chr01:25917414..25917438 (25 bp)
TTGAGCTTACATGCCACGACGCTGG
LOC_Os01g45080
OsAffx.23662.2.S1_at--1111--8451Chr01:25917436..25917460 (25 bp)
TGGCCTTCACCACGGACACAAGATA
LOC_Os01g45080
OsAffx.23662.2.S1_at--301--10511Chr01:25917441..25917465 (25 bp)
TTCACCACGGACACAAGATACTGGG
LOC_Os01g45080
OsAffx.23662.2.S1_at--630--2191Chr01:25917451..25917475 (25 bp)
ACACAAGATACTGGGAAGTCTGGAA
LOC_Os01g45080
OsAffx.23662.2.S1_at--47--10371Chr01:25917493..25917513 (21 bp)
TTTTTCCCTCTCACTTACACGATGT
LOC_Os01g45080
Target Sequence
GGCTAATCGGCGACGGGATGCCATCTATGCCATCCAGATACCAGTAACGCCTAATGGAAACGTTGAGCTTACATGCCACG
ACGCTGGCCTTCACCACGGACACAAGATACTGGGAAGTCTGGAAAGTTTTAAAGATGTATTTTTTTCCCTCTCACTTACA
CGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23662.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis