Browse Element(s) Details


Os.27933.1.S1_at

Description gb:AK106980.1
DB_XREF= gi:32992189
TID=Os.27933.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide deformylase (P0004A09.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H07, full insert sequence.
FL= gb:AK106980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4507011/11Peptide deformylase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45040Os.26733.3.S1_x_at5/111+25890095..25893854hypothetical protein
LOC_Os01g45040Os.53731.1.S1_at2/111+25890095..25893854hypothetical protein
LOC_Os01g45050Os.27639.1.S1_x_at8/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050OsAffx.8980.1.S1_at6/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45050Os.53731.1.S1_at2/111+25894365..25899817transposon protein, putative, unclassified
LOC_Os01g45060Os.48563.1.S1_x_at10/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45060Os.48563.1.S1_s_at4/111+25906650..25910613Polygalacturonase family protein
LOC_Os01g45070Os.27933.2.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070OsAffx.23659.1.S1_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45070Os.27933.2.S1_s_at11/111+25912694..25916010Peptide deformylase, chloroplast precursor, putative, expressed
LOC_Os01g45080OsAffx.23662.2.S1_at11/111+25917137..25917585hypothetical protein
LOC_Os01g45090Os.45888.1.S1_at11/111+25919573..25920639LhMyb, putative, expressed
LOC_Os01g45100NANA1+25924052..25924618retrotransposon protein, putative, unclassified
LOC_Os01g45110Os.12253.1.S1_at11/111+25925299..25927215UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g45120NANA1+25930465..25930902hypothetical protein
LOC_Os01g45130NANA1+25932475..25932729hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001718biological_processconversion of met-tRNAf to fmet-tRNA
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0042586molecular_functionpeptide deformylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27933.1.S1_at--729--9491Chr01:25913032..25913054 (23 bp)
TCTCAAGATGAATAGCTTTCGGTTC
LOC_Os01g45070
Os.27933.1.S1_at--1015--3091Chr01:25912916..25913044 (25 bp)
AATAGCTTTCGGTTCTGGCAGTTTT
LOC_Os01g45070
Os.27933.1.S1_at--1049--4412Chr01:25912841..25912865 (25 bp)
GCCAGTATCACATATTCTTCTGTCA
LOC_Os01g45070
Os.27933.1.S1_at--262--392Chr01:25912835..25912859 (25 bp)
ATCACATATTCTTCTGTCATTCTAC
LOC_Os01g45070
Os.27933.1.S1_at--480--7132Chr01:25912820..25912844 (25 bp)
GTCATTCTACTTTTTGCCAGTCTTG
LOC_Os01g45070
Os.27933.1.S1_at--1005--2032Chr01:25912812..25912836 (25 bp)
ACTTTTTGCCAGTCTTGCTGTATCT
LOC_Os01g45070
Os.27933.1.S1_at--770--10692Chr01:25912807..25912831 (25 bp)
TTGCCAGTCTTGCTGTATCTAGTTT
LOC_Os01g45070
Os.27933.1.S1_at--928--1152Chr01:25912802..25912826 (25 bp)
AGTCTTGCTGTATCTAGTTTTGTGC
LOC_Os01g45070
Os.27933.1.S1_at--381--132Chr01:25912765..25912789 (25 bp)
ATTACAACCAGAAATTATGCTAGTG
LOC_Os01g45070
Os.27933.1.S1_at--500--7391Chr01:25912743..25912767 (25 bp)
GTGATGAATGAGCTGTATTTCCTAA
LOC_Os01g45070
Os.27933.1.S1_at--526--2972Chr01:25912737..25912761 (25 bp)
AATGAGCTGTATTTCCTAAGAAGGA
LOC_Os01g45070
Target Sequence 
TCTCAAGATGAATAGCTTTCGGTTCTGGCAGTTTTTCNAAACATCCTGCTGAGCTTCACATTGAAGATTGTGTATTAGAA
CNGTTGCCAGTATCACATATTCTTCTGTCATTCTACTTTTTGCCAGTCTTGCTGTATCTAGTTTTGTGCAANNCCNAGTG
ATATTACAACCAGAAATTATGCTAGTGATGAATGAGCTGTATTTCCTAAGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis