Browse Element(s) Details


Os.48563.1.S1_s_at

Description gb:CR278327
DB_XREF= gi:44664893
DB_XREF=CR278327
CLONE=p536g05p5
TID=Os.48563.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polygalacturonase (P0004A09.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4497011/11Polygalacturonase family protein, expressed
LOC_Os01g450604/11Polygalacturonase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48563.1.S1_s_at--1138--1831Chr01:25844633..25844657 (25 bp)
ACGACCCTTTCTGCTGGCAAGCTTT
LOC_Os01g44970
Os.48563.1.S1_s_at--497--4071Chr01:25844634..25844658 (25 bp)
CGACCCTTTCTGCTGGCAAGCTTTT
LOC_Os01g44970
Os.48563.1.S1_s_at--822--5812Chr01:25844635..25844659 (25 bp)
GACCCTTTCTGCTGGCAAGCTTTTG
LOC_Os01g44970
Os.48563.1.S1_s_at--270--4192Chr01:25910496..25910520 (25 bp)
CCCTTTCTGCTGGCAAGCTTTTGGG
LOC_Os01g45060
Os.48563.1.S1_s_at--744--10572Chr01:25910500..25910524 (25 bp)
TTCTGCTGGCAAGCTTTTGGGGAGC
LOC_Os01g45060
Os.48563.1.S1_s_at--734--3832Chr01:25910573..25910597 (25 bp)
CTGCTGGGAACAACTTACAGTCATA
LOC_Os01g45060
Os.48563.1.S1_s_at--269--9072Chr01:25910692..25910716 (25 bp)
TGCTTGGCGGTGTGCATATATACAG
NONE
Os.48563.1.S1_s_at--743--4932Chr01:25910693..25910717 (25 bp)
GCTTGGCGGTGTGCATATATACAGT
NONE
Os.48563.1.S1_s_at--304--3612Chr01:25910694..25910718 (25 bp)
CTTGGCGGTGTGCATATATACAGTT
NONE
Os.48563.1.S1_s_at--196--10872Chr01:25910695..25910719 (25 bp)
TTGGCGGTGTGCATATATACAGTTA
NONE
Os.48563.1.S1_s_at--29--8492Chr01:25910696..25910720 (25 bp)
TGGCGGTGTGCATATATACAGTTAT
NONE
Target Sequence 
ACGACCCTTTCTGCTGGCAAGCTTTTGGGGAGCTCTACACTCCAACAGTCCCTCCAATTGCTTGCTTGCACCTTGGAAAA
NCTGCTGGGAACAACTTACAGTCATANCACGACTTATGTTGATACACAAAAGTACCTTCATCCATTGATNGGNGCTTATC
CATGANGTGGTCGNGAAACTNNCGANCCCTTTGNANCANTGCTTGGCGGTGTGCATATATACAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48563.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis