Browse Element(s) Details


Os.14565.1.S1_at

Description gb:C98364
DB_XREF= gi:3761116
DB_XREF=C98364
CLONE=C2515_2Z
TID=Os.14565.1
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S ribosomal protein L24 (OJ1118_B03.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1225011/1160S ribosomal protein L24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed
LOC_Os07g12260OsAffx.3765.1.S1_at1/117+6882797..6887368retrotransposon protein, putative, unclassified
LOC_Os07g12260Os.45957.2.S1_x_at1/117+6882797..6887368retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14565.1.S1_at--1126--10311Chr07:6863933..6863957 (25 bp)
TTTCAAACTCGAAGTGCAAGCGCTA
LOC_Os07g12250
Os.14565.1.S1_at--749--9891Chr07:6864355..6864379 (25 bp)
TACTCCCGGTCTATAGTTGGTGCTA
LOC_Os07g12250
Os.14565.1.S1_at--1148--7311Chr07:6864374..6864398 (25 bp)
GTGCTACCCTTGAAGTCATCCAGAA
LOC_Os07g12250
Os.14565.1.S1_at--912--2651Chr07:6864412..6864436 (25 bp)
AAGCCAGAGGTTCGTGATGCAGCAA
LOC_Os07g12250
Os.14565.1.S1_at--915--7511Chr07:6864843..6864867 (25 bp)
GTGGCAAAATCGCAGAAGGCTTCTG
LOC_Os07g12250
Os.14565.1.S1_at--368--2311Chr07:6864870..6864894 (25 bp)
AAAGGCAATGCTCCCAAGCCTGGGA
LOC_Os07g12250
Os.14565.1.S1_at--1067--5391Chr07:6864923..6864947 (25 bp)
GAAGCGGTAGATGCTCCCATTTCCA
LOC_Os07g12250
Os.14565.1.S1_at--939--1291Chr07:6864931..6864955 (25 bp)
AGATGCTCCCATTTCCAGAGCTGAT
LOC_Os07g12250
Os.14565.1.S1_at--975--8771Chr07:6864981..6865005 (25 bp)
TGTTATTTATCCAGACCCTTTTTTG
LOC_Os07g12250
Os.14565.1.S1_at--1135--10391Chr07:6865014..6865038 (25 bp)
TTTTGCACCATCAGTTGTCCTGAGT
LOC_Os07g12250
Os.14565.1.S1_at--758--6631Chr07:6865027..6865051 (25 bp)
GTTGTCCTGAGTACCATACAAATGG
LOC_Os07g12250
Target Sequence 
TTTCAAACTCGAAGTGCAAGCGCTACTTCCACAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAG
CAGCACAAGAAGGATATTCACNCCGAGNCAGTCAAGAAGAGGCNCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGT
TGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAAGCCAGAGGTTCGTGATGCAGCAAGGGAANCCGCTCTTC
GTGAGATCAAGGAGCGCATCAAGAAGACAAAGGACGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCT
TCTGGNAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATT
TCCAGAGCTGATNNNNNCTTCTAGATCAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAANTTTTGCACCA
TCAGTTGTCCTGAGTACCATACAAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis