Browse Element(s) Details


OsAffx.3765.1.S1_at

Description tigr:9632.m00975
TID=OsAffx.3765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1100411/11retrotransposon protein, putative, unclassified
LOC_Os07g122601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10970OsAffx.13764.1.S1_at11/114+5935215..5935601hypothetical protein
LOC_Os04g10980Os.47463.1.S1_x_at6/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10980Os.14491.2.S1_x_at4/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10990Os.45957.2.S1_x_at1/114+5954664..5955803retrotransposon protein, putative, unclassified
LOC_Os04g11004OsAffx.3765.1.S1_at11/114+5956522..5959405retrotransposon protein, putative, unclassified
LOC_Os04g11020OsAffx.8338.1.S1_x_at3/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.10020.1.S1_x_at2/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.22240.1.S1_x_at1/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11030Os.6048.1.A1_at11/114+5966682..5967388expressed protein
LOC_Os04g11040OsAffx.25975.1.S1_at11/114+5969523..5970189expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3765.1.S1_at--1160--6611Chr04:5958789..5958813 (25 bp)
GTTGGGCAGAGTTAATCATGGCAGT
LOC_Os04g11004
OsAffx.3765.1.S1_at--678--1451Chr04:5958612..5958636 (25 bp)
AGAAGACTTATCAACGGCACTCATT
LOC_Os04g11004
OsAffx.3765.1.S1_at--839--9711Chr04:5958602..5958626 (25 bp)
TCAACGGCACTCATTCAAGGAAATT
LOC_Os04g11004
OsAffx.3765.1.S1_at--723--3191Chr04:5958587..5958611 (25 bp)
CAAGGAAATTTTCAAGCCAGTTAAT
LOC_Os04g11004
OsAffx.3765.1.S1_at--1090--4411Chr04:5958572..5958596 (25 bp)
GCCAGTTAATAAGATGCCATTTCAA
LOC_Os04g11004
OsAffx.3765.1.S1_at--1109--5552Chr07:6886379..6886403 (25 bp)
GAAAGGGATTTTGGGAGCAGCTCCT
LOC_Os07g12260
OsAffx.3765.1.S1_at--886--1951Chr04:5958290..5958314 (25 bp)
ACTGGTGTTGTCTGAATGCGCACTT
LOC_Os04g11004
OsAffx.3765.1.S1_at--550--611Chr04:5958275..5958299 (25 bp)
ATGCGCACTTGCAGGTACTATGGGC
LOC_Os04g11004
OsAffx.3765.1.S1_at--193--2371Chr04:5958246..5958270 (25 bp)
AAACCATCAGGTTTCATGGGTTGAT
LOC_Os04g11004
OsAffx.3765.1.S1_at--251--2491Chr04:5958213..5958237 (25 bp)
AACAGCTGCTTATCCTAGGGTGTGT
LOC_Os04g11004
OsAffx.3765.1.S1_at--483--10051Chr04:5958110..5958134 (25 bp)
TAGGACGGCCCAGGGAGGAATATTC
LOC_Os04g11004
Target Sequence 
GTTGGGCAGAGTTAATCATGGCAGTGCATAGTAAATTTGGGAAGGATAAGTATCAGGAGTATTTGGAAGAGTTAGAAAAT
TTGAGTCAAGAGGAACTGCTTGGGGAAATCCACAAGAAGACTTATCAACGGCACTCATTCAAGGAAATTTTCAAGCCAGT
TAATAAGATGCCATTTCAAGGGAAAGGGATTTTGGGAGCAGCTCCTGAGGATAACAAGAAGCTCCAGGAGGATGATAAAT
TTGAAGAAGGGGATGCAGAAAGTTCAGAGGAGGAACTGGTGTTGTCTGAATGCGCACTTGCAGGTACTATGGGCAGGAAA
ACCATCAGGTTTCATGGGTTGATACAAAAACAACAGCTGCTTATCCTAGGGTGTGTTTGGATGGAGGGATATGGGTGGAT
AGGACATGACGGCCCATTTTCTGTGGGTGTTTGGTTGCTTGCATGGGTGTGGGATAGGACGGCCCAGGGAGGAATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis