Browse Element(s) Details


OsAffx.25975.1.S1_at

Description tigr:9632.m00978
TID=OsAffx.25975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10980Os.47463.1.S1_x_at6/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10980Os.14491.2.S1_x_at4/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10990Os.45957.2.S1_x_at1/114+5954664..5955803retrotransposon protein, putative, unclassified
LOC_Os04g11004OsAffx.3765.1.S1_at11/114+5956522..5959405retrotransposon protein, putative, unclassified
LOC_Os04g11020OsAffx.8338.1.S1_x_at3/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.10020.1.S1_x_at2/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.22240.1.S1_x_at1/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11030Os.6048.1.A1_at11/114+5966682..5967388expressed protein
LOC_Os04g11040OsAffx.25975.1.S1_at11/114+5969523..5970189expressed protein
LOC_Os04g11050Os.27908.1.A1_at9/114+5984602..5989053hypothetical protein
LOC_Os04g11060OsAffx.13765.1.S1_at11/114+5991874..5992156expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25975.1.S1_at--1049--3631Chr04:5969766..5969790 (25 bp)
CTTCGCCATGGTAGCTCAAGCTATG
LOC_Os04g11040
OsAffx.25975.1.S1_at--772--1571Chr04:5969778..5969802 (25 bp)
AGCTCAAGCTATGGCGATTCGCGGC
LOC_Os04g11040
OsAffx.25975.1.S1_at--127--1071Chr04:5969835..5969859 (25 bp)
AGGGAGCACGAGTGCGAAACATACC
LOC_Os04g11040
OsAffx.25975.1.S1_at--931--5531Chr04:5969850..5969874 (25 bp)
GAAACATACCCTGCCTCAGGCTGTT
LOC_Os04g11040
OsAffx.25975.1.S1_at--850--9631Chr04:5969865..5969889 (25 bp)
TCAGGCTGTTGGAAGTGGCACCTCT
LOC_Os04g11040
OsAffx.25975.1.S1_at--987--5311Chr04:5969876..5969900 (25 bp)
GAAGTGGCACCTCTGTGGACAACCA
LOC_Os04g11040
OsAffx.25975.1.S1_at--526--591Chr04:5969903..5969927 (25 bp)
ATGCCATCCCTCGTGATCAGTACAG
LOC_Os04g11040
OsAffx.25975.1.S1_at--204--9431Chr04:5969913..5969937 (25 bp)
TCGTGATCAGTACAGCAACCATGGG
LOC_Os04g11040
OsAffx.25975.1.S1_at--765--1951Chr04:5969959..5969983 (25 bp)
ACTGGTACTGGTGATACAAACAACT
LOC_Os04g11040
OsAffx.25975.1.S1_at--271--2191Chr04:5969978..5970125 (25 bp)
ACAACTATAGCCCTAATCCTGAGAA
LOC_Os04g11040
OsAffx.25975.1.S1_at--1043--4531Chr04:5970110..5970134 (25 bp)
GCCCTAATCCTGAGAATAAGCTGCT
LOC_Os04g11040
Target Sequence 
CTTCGCCATGGTAGCTCAAGCTATGGCGATTCGCGGCACGGGTACGACGGCGGAGCAGGATAACACCGGAGGGAGCACGA
GTGCGAAACATACCCTGCCTCAGGCTGTTGGAAGTGGCACCTCTGTGGACAACCACCATGCCATCCCTCGTGATCAGTAC
AGCAACCATGGGGGTGATGATGGAGGTGGCAGTACTGGTACTGGTGATACAAACAACTATAGCCCTAATCCTGAGAATAA
GCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis