Browse Element(s) Details


OsAffx.13765.1.S1_at

Description tigr:9632.m00980
TID=OsAffx.13765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11030Os.6048.1.A1_at11/114+5966682..5967388expressed protein
LOC_Os04g11040OsAffx.25975.1.S1_at11/114+5969523..5970189expressed protein
LOC_Os04g11050Os.27908.1.A1_at9/114+5984602..5989053hypothetical protein
LOC_Os04g11060OsAffx.13765.1.S1_at11/114+5991874..5992156expressed protein
LOC_Os04g11070NANA4+5996736..5997737hypothetical protein
LOC_Os04g11080OsAffx.26069.1.S1_x_at3/114+6008048..6011415hypothetical protein
LOC_Os04g11090Os.1709.1.S1_x_at7/114+6012874..6018378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11090Os.45212.1.S1_x_at1/114+6012874..6018378retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13765.1.S1_at--725--3531Chr04:5991930..5991954 (25 bp)
CATGCCGAGAAACATGGCGAAGGAT
LOC_Os04g11060
OsAffx.13765.1.S1_at--725--2111Chr04:5991941..5991965 (25 bp)
ACATGGCGAAGGATGGATATCACAA
LOC_Os04g11060
OsAffx.13765.1.S1_at--103--8011Chr04:5991951..5991975 (25 bp)
GGATGGATATCACAAAACGGATTTG
LOC_Os04g11060
OsAffx.13765.1.S1_at--248--2391Chr04:5991965..5992017 (25 bp)
AAACGGATTTGGGACTGAAGATGGA
LOC_Os04g11060
OsAffx.13765.1.S1_at--409--8511Chr04:5992014..5992038 (25 bp)
TGGAAGAACTGGACCTCCTAGCAAT
LOC_Os04g11060
OsAffx.13765.1.S1_at--58--8111Chr04:5992024..5992048 (25 bp)
GGACCTCCTAGCAATGATCACCAGT
LOC_Os04g11060
OsAffx.13765.1.S1_at--974--2991Chr04:5992036..5992060 (25 bp)
AATGATCACCAGTGCCCACTTGGAA
LOC_Os04g11060
OsAffx.13765.1.S1_at--348--391Chr04:5992040..5992064 (25 bp)
ATCACCAGTGCCCACTTGGAACCTA
LOC_Os04g11060
OsAffx.13765.1.S1_at--151--8511Chr04:5992056..5992080 (25 bp)
TGGAACCTACCCTAACTGCCAAGGA
LOC_Os04g11060
OsAffx.13765.1.S1_at--680--2551Chr04:5992069..5992093 (25 bp)
AACTGCCAAGGAGTTTCTCAGAGCA
LOC_Os04g11060
OsAffx.13765.1.S1_at--615--2911Chr04:5992076..5992100 (25 bp)
AAGGAGTTTCTCAGAGCAATCAACG
LOC_Os04g11060
Target Sequence 
CATGCCGAGAAACATGGCGAAGGATGGATATCACAAAACGGATTTGGGACTGAAGATGGAAGAACTGGACCTCCTAGCAA
TGATCACCAGTGCCCACTTGGAACCTACCCTAACTGCCAAGGAGTTTCTCAGAGCAATCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis