Browse Element(s) Details


Os.6048.1.A1_at

Description gb:BI305810
DB_XREF= gi:14981119
DB_XREF=NL_1_N06
CLONE=NL_1_N06
TID=Os.6048.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.6048 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1103011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10980Os.47463.1.S1_x_at6/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10980Os.14491.2.S1_x_at4/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10990Os.45957.2.S1_x_at1/114+5954664..5955803retrotransposon protein, putative, unclassified
LOC_Os04g11004OsAffx.3765.1.S1_at11/114+5956522..5959405retrotransposon protein, putative, unclassified
LOC_Os04g11020OsAffx.8338.1.S1_x_at3/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.10020.1.S1_x_at2/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11020OsAffx.22240.1.S1_x_at1/114+5964264..5966259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11030Os.6048.1.A1_at11/114+5966682..5967388expressed protein
LOC_Os04g11040OsAffx.25975.1.S1_at11/114+5969523..5970189expressed protein
LOC_Os04g11050Os.27908.1.A1_at9/114+5984602..5989053hypothetical protein
LOC_Os04g11060OsAffx.13765.1.S1_at11/114+5991874..5992156expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6048.1.A1_at--283--9611Chr04:5966842..5966866 (25 bp)
TCATCCTCGCAATGGTCATGGCCAA
LOC_Os04g11030
Os.6048.1.A1_at--948--4251Chr04:5966988..5967012 (25 bp)
CCGGAGTACGACAGCTGGAGCAGCC
LOC_Os04g11030
Os.6048.1.A1_at--940--4591Chr04:5967049..5967073 (25 bp)
GCGAACAAGCTCAGCCATGATCGAG
LOC_Os04g11030
Os.6048.1.A1_at--621--6391Chr04:5967067..5967091 (25 bp)
GATCGAGCTAGATGCAGCTTACCCA
LOC_Os04g11030
Os.6048.1.A1_at--819--9531Chr04:5967094..5967118 (25 bp)
TCTACCCATGTCCTGTACGTATATA
LOC_Os04g11030
Os.6048.1.A1_at--196--2711Chr04:5967125..5967149 (25 bp)
AAGCTTGCAAGCCATGGGTTATACA
LOC_Os04g11030
Os.6048.1.A1_at--72--7691Chr04:5967140..5967164 (25 bp)
GGGTTATACACTTATTACGTACGCT
LOC_Os04g11030
Os.6048.1.A1_at--780--1891Chr04:5967156..5967180 (25 bp)
ACGTACGCTTGATTGCATGTAGCTA
LOC_Os04g11030
Os.6048.1.A1_at--740--3571Chr04:5967186..5967210 (25 bp)
CATATATGTACGGTTGTGGCTCTAG
LOC_Os04g11030
Os.6048.1.A1_at--1033--7531Chr04:5967201..5967225 (25 bp)
GTGGCTCTAGTTGTGGTTGCATGAT
LOC_Os04g11030
Os.6048.1.A1_at--354--1951Chr04:5967292..5967316 (25 bp)
ACTGTATTTAACCTCATCACGTGTA
LOC_Os04g11030
Target Sequence 
TCATCCTCGCAATGGTCATGGCCAACGCCTTCGGCGCCGTCACTTCTCGCACGGCGCCGGGGGAGGAGGCGCCGCTGGCG
CACGGCGTGGTGAAGACGACGACGGCGGAGGGGACGTCCATCGACAACCACCACGCGATACCGCGGCCGGAGTACGACAG
CTGGAGCAGCCCGGGGAACATGCCGGGGAGTGGCCATGACATTGGGAGCGAACAAGCTCAGCCATGATCGAGCTAGATGC
AGCTTACCCAGCTCTACCCATGTCCTGTACGTATATACATAGCAAGCTTGCAAGCCATGGGTTATACACTTATTACGTAC
GCTTGATTGCATGTAGCTAGTATCCATATATGTACGGTTGTGGCTCTAGTTGTGGTTGCATGATAATTCGAAGATGCTTT
GTAGTTTCTACAGTGATTGTATATTTGTATTGCTCATGTAAAAGTGTTTAACTGTATTTAACCTCATCACGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6048.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis