Browse Element(s) Details


OsAffx.13764.1.S1_at

Description tigr:9632.m00971
TID=OsAffx.13764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1097011/11hypothetical protein
LOC_Os11g280101/11hypothetical protein
LOC_Os04g140401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10940OsAffx.25974.1.S1_at11/114+5911009..5911683hypothetical protein
LOC_Os04g10950NANA4+5920165..5923497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.47463.1.S1_x_at6/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.14491.2.S1_x_at5/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10970OsAffx.13764.1.S1_at11/114+5935215..5935601hypothetical protein
LOC_Os04g10980Os.47463.1.S1_x_at6/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10980Os.14491.2.S1_x_at4/114+5937756..5947396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10990Os.45957.2.S1_x_at1/114+5954664..5955803retrotransposon protein, putative, unclassified
LOC_Os04g11004OsAffx.3765.1.S1_at11/114+5956522..5959405retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13764.1.S1_at--71--5331Chr04:5935267..5935291 (25 bp)
GAAGTGGTCCAATGACAAGATTTTG
LOC_Os04g10970
OsAffx.13764.1.S1_at--977--10791Chr04:5935289..5935313 (25 bp)
TTGTTCTATGTGTATGTTGGAGGCA
LOC_Os04g10970
OsAffx.13764.1.S1_at--1042--8531Chr04:5935306..5935330 (25 bp)
TGGAGGCATACCACGAAGGATCTTC
LOC_Os04g10970
OsAffx.13764.1.S1_at--211--2631Chr04:5935346..5935370 (25 bp)
AACCAAGGACTTAAGCGACAAGCTT
LOC_Os04g10970
OsAffx.13764.1.S1_at--590--4251Chr04:5935406..5935430 (25 bp)
CCGTGTGGTCGAAAGTCTCATGACA
LOC_Os04g10970
OsAffx.13764.1.S1_at--559--2851Chr04:5935418..5935442 (25 bp)
AAGTCTCATGACAAAGACCATGGCT
LOC_Os04g10970
OsAffx.13764.1.S1_at--10--2331Chr04:5935430..5935454 (25 bp)
AAAGACCATGGCTCGGACACTCAGA
LOC_Os04g10970
OsAffx.13764.1.S1_at--349--1351Chr04:5935452..5935476 (25 bp)
AGACTTCGCCGAACAAGAACTTCGT
LOC_Os04g10970
OsAffx.13764.1.S1_at--780--2211Chr04:5935464..5935488 (25 bp)
ACAAGAACTTCGTCAGAAGGCGGTG
LOC_Os04g10970
OsAffx.13764.1.S1_at--844--7672Chr04:5935530..5935554 (25 bp)
GGGTTTCGCCAGATGCCGAACCTCA
LOC_Os04g10970
OsAffx.13764.1.S1_at--473--5432Chr04:5935547..5935571 (25 bp)
GAACCTCACCGAAAAGTGGCTCAAC
LOC_Os04g10970
Target Sequence 
GAAGTGGTCCAATGACAAGATTTTGTTCTATGTGTATGTTGGAGGCATACCACGAAGGATCTTCGGCCGGACCTGCCGAA
ACCAAGGACTTAAGCGACAAGCTTAGACTGGAGGCAACTGGCGAAGATCGAGAAGGGAACCGTGTGGTCGAAAGTCTCAT
GACAAAGACCATGGCTCGGACACTCAGACTTCGCCGAACAAGAACTTCGTCAGAAGGCGGTGTGGGTGAGGGCGATAAGG
TGAAAGCCTTGGCAGGAGGGCCCGGGTTTCGCCAGATGCCGAACCTCACCGAAAAGTGGCTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis