Browse Element(s) Details


OsAffx.25974.1.S1_at

Description tigr:9632.m00968
TID=OsAffx.25974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1094011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10890OsAffx.25972.1.S1_at11/114+5884795..5886768Zinc knuckle family protein
LOC_Os04g10900NANA4+5888237..5889715retrotransposon protein, putative, unclassified
LOC_Os04g10910OsAffx.13762.1.S1_at10/114+5891722..5894579hypothetical protein
LOC_Os04g10924OsAffx.25973.1.S1_at11/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.13763.1.S1_at6/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.16205.1.S1_at2/114+5900306..5904584hypothetical protein
LOC_Os04g10940OsAffx.25974.1.S1_at11/114+5911009..5911683hypothetical protein
LOC_Os04g10950NANA4+5920165..5923497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.47463.1.S1_x_at6/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.14491.2.S1_x_at5/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10970OsAffx.13764.1.S1_at11/114+5935215..5935601hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25974.1.S1_at--342--611Chr04:5911625..5911649 (25 bp)
ATGCGGCTAGAGAGACTCCGGGAAC
LOC_Os04g10940
OsAffx.25974.1.S1_at--238--8311Chr04:5911621..5911645 (25 bp)
GGCTAGAGAGACTCCGGGAACATAT
LOC_Os04g10940
OsAffx.25974.1.S1_at--947--7611Chr04:5911606..5911630 (25 bp)
GGGAACATATTTTTCTCTTGGTAGA
LOC_Os04g10940
OsAffx.25974.1.S1_at--181--8171Chr04:5911605..5911629 (25 bp)
GGAACATATTTTTCTCTTGGTAGAA
LOC_Os04g10940
OsAffx.25974.1.S1_at--544--5291Chr04:5911583..5911607 (25 bp)
GAATGGATGGTCATAATCCTACAGT
LOC_Os04g10940
OsAffx.25974.1.S1_at--644--6251Chr04:5911578..5911602 (25 bp)
GATGGTCATAATCCTACAGTGGCTT
LOC_Os04g10940
OsAffx.25974.1.S1_at--883--8591Chr04:5911576..5911600 (25 bp)
TGGTCATAATCCTACAGTGGCTTAT
LOC_Os04g10940
OsAffx.25974.1.S1_at--1095--9751Chr04:5911570..5911594 (25 bp)
TAATCCTACAGTGGCTTATGGTGCA
LOC_Os04g10940
OsAffx.25974.1.S1_at--475--571Chr04:5911568..5911592 (25 bp)
ATCCTACAGTGGCTTATGGTGCAAA
LOC_Os04g10940
OsAffx.25974.1.S1_at--900--4291Chr04:5911566..5911590 (25 bp)
CCTACAGTGGCTTATGGTGCAAATA
LOC_Os04g10940
OsAffx.25974.1.S1_at--664--9851Chr04:5911564..5911588 (25 bp)
TACAGTGGCTTATGGTGCAAATACT
LOC_Os04g10940
Target Sequence 
ATGCGGCTAGAGAGACTCCGGGAACATATTTTTCTCTTGGTAGAATGGATGGTCATAATCCTACAGTGGCTTATGGTGCA
AATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis