Browse Element(s) Details


OsAffx.13763.1.S1_at

Description tigr:9632.m00967
TID=OsAffx.13763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g109246/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10870OsAffx.25970.2.S1_s_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_x_at9/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.1.S1_at3/114+5874430..5876117hypothetical protein
LOC_Os04g10880OsAffx.21755.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880OsAffx.10222.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880Os.45902.1.A1_x_at1/114+5879059..5882459hypothetical protein
LOC_Os04g10890OsAffx.25972.1.S1_at11/114+5884795..5886768Zinc knuckle family protein
LOC_Os04g10900NANA4+5888237..5889715retrotransposon protein, putative, unclassified
LOC_Os04g10910OsAffx.13762.1.S1_at10/114+5891722..5894579hypothetical protein
LOC_Os04g10924OsAffx.25973.1.S1_at11/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.13763.1.S1_at6/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.16205.1.S1_at2/114+5900306..5904584hypothetical protein
LOC_Os04g10940OsAffx.25974.1.S1_at11/114+5911009..5911683hypothetical protein
LOC_Os04g10950NANA4+5920165..5923497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.47463.1.S1_x_at6/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10960Os.14491.2.S1_x_at5/114+5926777..5930473transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13763.1.S1_at--728--312Chr04:5904752..5904776 (25 bp)
ATACCTCCTTCAGAGCATCTGCTAA
NONE
OsAffx.13763.1.S1_at--1136--3731Chr04:5904611..5904632 (22 bp)
CTAAGCAAAATCATGAGCGCCAGGA
NONE
OsAffx.13763.1.S1_at--17--5871Chr04:5904597..5904621 (25 bp)
GAGCGCCAGGAAGGCAAATCTTTTT
NONE
OsAffx.13763.1.S1_at--8--451Chr04:5904580..5904604 (25 bp)
ATCTTTTTGCATTAGCGGTCATGGC
NONE
OsAffx.13763.1.S1_at--714--9631Chr04:5904562..5904586 (25 bp)
TCATGGCATTCTTCTTCGTAGGAAT
NONE
OsAffx.13763.1.S1_at--959--111Chr04:5904511..5904535 (25 bp)
ATTCAGAAGATCTTTTCCTTGGTAG
LOC_Os04g10924
OsAffx.13763.1.S1_at--107--9251Chr04:5904496..5904520 (25 bp)
TCCTTGGTAGAACTGATGGTCATAA
LOC_Os04g10924
OsAffx.13763.1.S1_at--131--371Chr04:5904475..5904499 (25 bp)
ATAATCATGCAGCTTATGGTGCTAA
LOC_Os04g10924
OsAffx.13763.1.S1_at--718--5551Chr04:5904388..5904412 (25 bp)
GAAAGCTCATGGTCAGTACTACTGA
LOC_Os04g10924
OsAffx.13763.1.S1_at--1095--1311Chr04:5904354..5904378 (25 bp)
AGATGGCACTATGTCACCACGTCAT
LOC_Os04g10924
OsAffx.13763.1.S1_at--635--511Chr04:5904331..5904355 (25 bp)
ATCGATCCCCAGATTGGTACTGTCA
LOC_Os04g10924
Target Sequence 
ATACCTCCTTCAGAGCATCTGCTAAGCAAAATCATGAGCGCCAGGAAGGCAAATCTTTTTGCATTAGCGGTCATGGCATT
CTTCTTCGTAGGAATTGTAATTGCTGATGTGACACAAGGAAATTCAGAAGATCTTTTCCTTGGTAGAACTGATGGTCATA
ATCATGCAGCTTATGGTGCTAATACTCACTCAAACAGTGGAGTTATGAACAAAGGAGAGAATTCAGGTGCAGATTCTAAT
GAAAGAAAGCTCATGGTCAGTACTACTGATGGACAGACAGATGGCACTATGTCACCACGTCATCGATCCCCAGATTGGTA
CTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis