Browse Element(s) Details


Os.7408.1.S1_at

Description gb:AK101519.1
DB_XREF= gi:32986728
TID=Os.7408.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046J24, full insert sequence.
FL= gb:AK101519.1 gb:AK066897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3511011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35080NANA5+20745363..20746099hypothetical protein
LOC_Os05g35090OsAffx.16467.1.S1_at9/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35090Os.26886.2.S1_s_at7/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35090Os.26886.6.S1_s_at7/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35100Os.26886.1.S1_x_at8/115+20756664..20760016transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35100Os.26886.3.S1_x_at6/115+20756664..20760016transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35110Os.7408.1.S1_at11/115+20763988..20767906Leucine Rich Repeat family protein, expressed
LOC_Os05g35120Os.26886.2.S1_s_at9/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.6.S1_s_at8/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.16467.1.S1_at7/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.3.S1_x_at6/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.3425.1.S1_at1/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35130OsAffx.4520.1.S1_at11/115+20784374..20784898hypothetical protein
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7408.1.S1_at--899--2731Chr05:20767340..20767364 (25 bp)
AAGACGGTCTCGCAAACCTGAACAT
LOC_Os05g35110
Os.7408.1.S1_at--577--8011Chr05:20767442..20767466 (25 bp)
GGAGGCACTCCCTGATCATCAGTGG
LOC_Os05g35110
Os.7408.1.S1_at--572--8191Chr05:20767522..20767546 (25 bp)
GGAAGAACCATGGTGCCTAGCCACG
LOC_Os05g35110
Os.7408.1.S1_at--981--3711Chr05:20767538..20767562 (25 bp)
CTAGCCACGCATACTGATGGTGTTT
LOC_Os05g35110
Os.7408.1.S1_at--774--4571Chr05:20767566..20767590 (25 bp)
GCGCTTGGTCCTGGTGAATGCCCTA
LOC_Os05g35110
Os.7408.1.S1_at--398--5271Chr05:20767581..20767605 (25 bp)
GAATGCCCTATTGCCTGGTGGATGA
LOC_Os05g35110
Os.7408.1.S1_at--609--7991Chr05:20767600..20767624 (25 bp)
GGATGATGAGGTGTTCCTTCCTGGC
LOC_Os05g35110
Os.7408.1.S1_at--806--7471Chr05:20767784..20767808 (25 bp)
GTGTGTGCTATGTAGCGGACTTCTA
LOC_Os05g35110
Os.7408.1.S1_at--657--2871Chr05:20767811..20767835 (25 bp)
AAGTGGCTTGTCTATTTGTGACTTG
LOC_Os05g35110
Os.7408.1.S1_at--857--7931Chr05:20767844..20767868 (25 bp)
GGATTCAATGTTTTGCCACTCTCTA
LOC_Os05g35110
Os.7408.1.S1_at--208--4411Chr05:20767858..20767882 (25 bp)
GCCACTCTCTAGACCGGAGATTTGA
LOC_Os05g35110
Target Sequence 
AAGACGGTCTCGCAAACCTGAACATCAGCCAGTGCACGGCCCTGACACCCCCAGCGGTCCAGGCGGTCTGCGACTCCTTC
CCGGCCCTCCACACTTGCCCTGGGAGGCACTCCCTGATCATCAGTGGCTGCCTCAGCCTGACGTCTGTCCACTGCGCCTG
CGCCCTCCACCCGCACCGTGCTGGAAGAACCATGGTGCCTAGCCACGCATACTGATGGTGTTTTGGGCGCTTGGTCCTGG
TGAATGCCCTATTGCCTGGTGGATGATGAGGTGTTCCTTCCTGGCCTAGAGGAAGAAGNNNCTGTGTGAATAAACTCNGA
ACTCAAATAATGTACAGTAGGACTCTATATCTGTAGGAATGATAACCATGGAGTGGAGAATGGCTGGAGAGTTGCGTCTC
CCCTGCCATTCAGGCCACTGACTGCAANCTACTACAAAGATGTGTGTGTGTGTGCTATGTAGCGGACTTCTATTAAGTGG
CTTGTCTATTTGTGACTTGTGAGCNAGGGGATTCAATGTTTTGCCACTCTCTAGACCGGAGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis