Browse Element(s) Details


Os.23226.1.S1_at

Description gb:AK073163.1
DB_XREF= gi:32983186
TID=Os.23226.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024I07, full insert sequence.
FL= gb:AK105822.1 gb:AK073163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7315011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23226.1.S1_at--759--4731Chr01:42749090..42749114 (25 bp)
GCTGACGCCAAATTCAACTCCTGAA
LOC_Os01g73150
Os.23226.1.S1_at--130--7151Chr01:42749051..42749075 (25 bp)
GTCTTGCATGAAAGTTTACCCACTG
LOC_Os01g73150
Os.23226.1.S1_at--48--10211Chr01:42749004..42749028 (25 bp)
TATTTTCAGAGGTTCCCAACTTGGG
LOC_Os01g73150
Os.23226.1.S1_at--646--7951Chr01:42748872..42748896 (25 bp)
GGATAACGTCGCCACTTAAGCTGTG
LOC_Os01g73150
Os.23226.1.S1_at--11--6591Chr01:42748826..42748850 (25 bp)
GATTCCAACCGCTTGATCATTGTGA
LOC_Os01g73150
Os.23226.1.S1_at--771--5911Chr01:42748769..42748793 (25 bp)
GAGCTTTGCAGGACAGGAGTTCTTT
LOC_Os01g73150
Os.23226.1.S1_at--147--131Chr01:42748726..42748750 (25 bp)
ATTCATCTGTTAGCCTTTTTCTTGA
LOC_Os01g73150
Os.23226.1.S1_at--504--8671Chr01:42748680..42748704 (25 bp)
TGTCCAAGTTTCTTTGTTCTTTTGC
LOC_Os01g73150
Os.23226.1.S1_at--845--10391Chr01:42748661..42748685 (25 bp)
TTTTGCGCCTTGCACTGCAGCATAG
LOC_Os01g73150
Os.23226.1.S1_at--948--2891Chr01:42748613..42748637 (25 bp)
AAGGTGCCTTTTTTGATAGCTGCAG
LOC_Os01g73150
Os.23226.1.S1_at--1049--1731Chr01:42748572..42748596 (25 bp)
ACCTTGTTGTTGCTATCTTTCGGAA
LOC_Os01g73150
Target Sequence 
GCTGACGCCAAATTCAACTCCTGAAGCTCTGAAAAGGAAGTCTTGCATGAAAGTTTACCCACTGGACNCCGAGAAAAATC
TGGGGTTATTTTCAGAGGTTCCCAACTTGGGCTTTGAGCAAGAAATCGGAAATGCTTATTCAGATTTGTTTGGGGACATA
AATCCTGATGATTTCCTCAACTTTGATCTTGAAATGATGGATGAAGATGAATTGGCAGGGATAACGTCGCCACTTAAGCT
GTGGGATGATTTGGAGGAAGGGGAGATTCCAACCGCTTGATCATTGTGACTGTGGGATGATNTTAAGCCAGTCTAGCAAA
TGAGCTTTGCAGGACAGGAGTTCTTTTTCTNTAGAGGCAATCAGATTCATCTGTTAGCCTTTTTCTTGATGTATTATTCG
TCAGAAGTTTTGTCCAAGTTTCTTTGTTCTTTTGCGCCTTGCACTGCAGCATAGGGTGCCTGGTGTTNTTCAAGCCAAAG
GTGCCTTTTTTGATAGCTGCAGTAATTTTGGGGGTGTAACCTTGTTGTTGCTATCTTTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis