Browse Element(s) Details


OsAffx.21933.1.S1_at

Description tigr:9629.m07247
TID=OsAffx.21933.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g731809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21933.1.S1_at--795--5731Chr01:42761024..42761048 (25 bp)
GACGGCGATGACGATTACTACTTCA
NONE
OsAffx.21933.1.S1_at--830--8931Chr01:42761016..42761040 (25 bp)
TGACGATTACTACTTCACCGCCATG
NONE
OsAffx.21933.1.S1_at--33--2211Chr01:42760969..42760993 (25 bp)
ACAACGACTACGGTCTGGTGGCCTT
LOC_Os01g73180
OsAffx.21933.1.S1_at--1108--2011Chr01:42760963..42760987 (25 bp)
ACTACGGTCTGGTGGCCTTCTTGGC
LOC_Os01g73180
OsAffx.21933.1.S1_at--513--10551Chr01:42760946..42760970 (25 bp)
TTCTTGGCCTGCCTAGCTGTCACGA
LOC_Os01g73180
OsAffx.21933.1.S1_at--996--9991Chr01:42760933..42760957 (25 bp)
TAGCTGTCACGACAATCGGCGTCGG
LOC_Os01g73180
OsAffx.21933.1.S1_at--952--8731Chr01:42760929..42760953 (25 bp)
TGTCACGACAATCGGCGTCGGCGTC
LOC_Os01g73180
OsAffx.21933.1.S1_at--97--3511Chr01:42760902..42760926 (25 bp)
CATGGTGAAGTACTACCGCTCCCAC
LOC_Os01g73180
OsAffx.21933.1.S1_at--1110--9571Chr01:42760834..42760858 (25 bp)
TCTTCCTCATGGCATCCGGCTGCGG
LOC_Os01g73180
OsAffx.21933.1.S1_at--817--4771Chr01:42760816..42760840 (25 bp)
GCTGCGGCACAAAAGCCATGCTGTA
LOC_Os01g73180
OsAffx.21933.1.S1_at--835--2351Chr01:42760805..42760829 (25 bp)
AAAGCCATGCTGTATACCCTCCACG
LOC_Os01g73180
Target Sequence 
GACGGCGATGACGATTACTACTTCACCGCCATGGCGGAGCGGGATGTCGGGATCGACAACGACTACGGTCTGGTGGCCTT
CTTGGCCTGCCTAGCTGTCACGACAATCGGCGTCGGCGTCCTCATGGTGAAGTACTACCGCTCCCACCATGGAGCCCTTG
CCGTCTTCCTCCTCGCCCTCGCCATCTTCCTCTTCCTCATGGCATCCGGCTGCGGCACAAAAGCCATGCTGTATACCCTC
CACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis