Browse Element(s) Details


OsAffx.9742.1.S1_s_at

Description gb:NM_189373.1
DB_XREF= gi:34905829
GEN=P0483G10.19
TID=OsAffx.9742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative peroxidase (P0483G10.19), mRNA.
PROD=putative peroxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7319011/11Peroxidase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9742.1.S1_s_at--442--9311Chr01:42764313..42764337 (25 bp)
TCCCGCAGGTGGACGCCACCATGGA
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--989--4411Chr01:42764399..42764423 (25 bp)
GCCATCGACGTACGGACGCCCAACG
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--932--9931Chr01:42764441..42764465 (25 bp)
TACGTCGACCTGCTCAGCCGGCAGG
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--500--8931Chr01:42764472..42764496 (25 bp)
TGACCTCCGATCAGGTGCTGTTCAG
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--589--6431Chr01:42764480..42764504 (25 bp)
GATCAGGTGCTGTTCAGCGACGGCA
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--266--9131Chr01:42764487..42764511 (25 bp)
TGCTGTTCAGCGACGGCAGGACGAG
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--668--1011Chr01:42764525..42764549 (25 bp)
AGGTTCGCCGTCGACCAGCCGGAGT
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--983--4911Chr01:42764559..42764583 (25 bp)
GCTTCGCCTTCTCCATGGTGAAGAT
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--805--10591Chr01:42764567..42764591 (25 bp)
TTCTCCATGGTGAAGATGTCGCAGA
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--1153--2791Chr01:42764579..42764603 (25 bp)
AAGATGTCGCAGATCCAGGTGATGA
LOC_Os01g73190
OsAffx.9742.1.S1_s_at--917--9031Chr01:42764610..42764634 (25 bp)
TGCAGGGGGAGATCCGCACCAACTG
LOC_Os01g73190
Target Sequence 
TCCCGCAGGTGGACGCCACCATGGACGCGCGGTTCGCCGCCCACCTCAGGCTCTCCTGCCCGGCCAAGAACACCACCAAC
ACCACCGCCATCGACGTACGGACGCCCAACGCCTTCGACAACAAGTACTACGTCGACCTGCTCAGCCGGCAGGGGCTCCT
GACCTCCGATCAGGTGCTGTTCAGCGACGGCAGGACGAGGGGCCTCGTCGGCAGGTTCGCCGTCGACCAGCCGGAGTTCT
TCCGCCGCTTCGCCTTCTCCATGGTGAAGATGTCGCAGATCCAGGTGATGACGGGAGTGCAGGGGGAGATCCGCACCAAC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9742.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis