Browse Element(s) Details


OsAffx.11838.1.S1_x_at

Description tigr:9629.m07254
TID=OsAffx.11838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABAWDS induced protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7325011/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed
LOC_Os01g73310Os.18675.1.S1_at11/111+42810921..42814292Actin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11838.1.S1_x_at--767--311Chr01:42788529..42788553 (25 bp)
ATAAATACTGGCTACTACGTACGTA
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--943--6291Chr01:42788571..42788595 (25 bp)
GATGAGCAAGGATGTACGTACGTAC
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--147--491Chr01:42788586..42788610 (25 bp)
ACGTACGTACACGTATATACGTTGC
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--221--7411Chr01:42788690..42788714 (25 bp)
GTGATTTCTGTAAACGTGTGGCCAT
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--396--9831Chr01:42788700..42788724 (25 bp)
TAAACGTGTGGCCATCGGATCGATG
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--781--7971Chr01:42788716..42788740 (25 bp)
GGATCGATGAATTCTACCGTGATGA
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--756--8831Chr01:42788738..42788762 (25 bp)
TGATAGAAACTGCTTCCTCGTACTC
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--203--1271Chr01:42788998..42789022 (25 bp)
AGATATGATGTTTCTCTAGTACAAT
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--471--2013Chr07:12417081..12417106 (25 bp)
ACTAGAAAATCGGTGCGCCTTTGGC
NONE
OsAffx.11838.1.S1_x_at--1151--4531Chr01:42789037..42789061 (25 bp)
GCGCCTTTGGCGCACAAACTAAAAA
LOC_Os01g73250
OsAffx.11838.1.S1_x_at--220--3112Chr04:19554974..19554998 (25 bp)
AATATCCCATGAATACTTGTACTTT
NONE
Target Sequence 
ATAAATACTGGCTACTACGTACGTATATATACGGTACAATAAGATGAGCAAGGATGTACGTACGTACACGTATATACGTT
GCTCACCCACAATTTCGCCGCCGCGGCCGCGCGCCTTATTCCAAACCAGTGTATGTGTGTACGTACATCTATATATGTAC
TGTGATTTCTGTAAACGTGTGGCCATCGGATCGATGAATTCTACCGTGATGATAGAAACTGCTTCCTCGTACTCCCTCCA
TCCCTAAATATTTGACGCCGTTGACTTTTTTAAATATGTTTGAGCGTTCGTCTTGTTCAAAAACTTTTATGAAATGTGTA
AAACTATATAGACATAAAAGTATAGTTAACAGTAAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAA
TAAAACAAACGGTCAAATTTTTTTAAAAAAAGTCAACGGCGTCAAACATTTTGGGATGGAGGGAGTATTAGATATGATGT
TTCTCTAGTACAATACTAGAAAATCGGTGCGCCTTTGGCGCACAAACTAAAAAAATATCCCATGAATACTTGTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11838.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis