Browse Element(s) Details


OsAffx.4937.1.S1_s_at

Description tigr:9634.m02536
TID=OsAffx.4937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7299011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4937.1.S1_s_at--1009--3396Chr12:8684223..8684247 (25 bp)
CAGCTTGACAACAATAATTTCTCAG
NONE
OsAffx.4937.1.S1_s_at--402--4936Chr12:8684221..8684245 (25 bp)
GCTTGACAACAATAATTTCTCAGGA
NONE
OsAffx.4937.1.S1_s_at--179--5636Chr12:8684217..8684241 (25 bp)
GACAACAATAATTTCTCAGGAACCT
NONE
OsAffx.4937.1.S1_s_at--469--2454Chr12:8684214..8684238 (25 bp)
AACAATAATTTCTCAGGAACCTCAA
NONE
OsAffx.4937.1.S1_s_at--736--3076Chr12:8684211..8684235 (25 bp)
AATAATTTCTCAGGAACCTCAATTC
NONE
OsAffx.4937.1.S1_s_at--729--3116Chr12:8684208..8684232 (25 bp)
AATTTCTCAGGAACCTCAATTCCTT
NONE
OsAffx.4937.1.S1_s_at--650--10554Chr12:8684205..8684229 (25 bp)
TTCTCAGGAACCTCAATTCCTTCAT
NONE
OsAffx.4937.1.S1_s_at--859--9634Chr12:8684202..8684226 (25 bp)
TCAGGAACCTCAATTCCTTCATCTT
NONE
OsAffx.4937.1.S1_s_at--1138--8174Chr12:8684199..8684223 (25 bp)
GGAACCTCAATTCCTTCATCTTATG
NONE
OsAffx.4937.1.S1_s_at--172--10734Chr12:8683949..8683973 (25 bp)
TTGAGGAACTGCAGCTTGGAAGGAC
NONE
OsAffx.4937.1.S1_s_at--706--8174Chr12:8683945..8683969 (25 bp)
GGAACTGCAGCTTGGAAGGACCTGT
NONE
Target Sequence 
CAGCTTGACAACAATAATTTCTCAGGAACCTCAATTCCTTCATCTTATGCCAATATCACCACACTTTTGAAATTGAGTTT
GAGGAACTGCAGCTTGGAAGGACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4937.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis