Browse Element(s) Details


OsAffx.4937.1.S1_x_at

Description tigr:9634.m02536
TID=OsAffx.4937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g729902/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4937.1.S1_x_at--1026--9351Chr06:14952300..14952324 (25 bp)
TCGACACATATAAAGCCCTTTCTAA
NONE
OsAffx.4937.1.S1_x_at--485--331Chr06:14952291..14952315 (25 bp)
ATAAAGCCCTTTCTAATTATATCTG
NONE
OsAffx.4937.1.S1_x_at--917--4371Chr06:14951579..14951940 (25 bp)
CCAACTTGGCTATTTAGATCTTTCT
NONE
OsAffx.4937.1.S1_x_at--719--2071NONE
ACTTGGCTATTTAGATCTTTCTCAC
NONE
OsAffx.4937.1.S1_x_at--304--10871Chr06:14951574..14951935 (25 bp)
TTGGCTATTTAGATCTTTCTCACAA
NONE
OsAffx.4937.1.S1_x_at--1099--8291Chr06:14951572..14951933 (25 bp)
GGCTATTTAGATCTTTCTCACAATC
NONE
OsAffx.4937.1.S1_x_at--265--10211Chr06:14951569..14951818 (25 bp)
TATTTAGATCTTTCTCACAATCTTC
NONE
OsAffx.4937.1.S1_x_at--592--9692Chr06:14951555..14951579 (25 bp)
TCACAATCTTCTAAACGGATCCATT
NONE
OsAffx.4937.1.S1_x_at--782--8632Chr06:14951549..14951573 (25 bp)
TCTTCTAAACGGATCCATTCCTGGA
NONE
OsAffx.4937.1.S1_x_at--235--6374Chr12:8683540..8683564 (25 bp)
GATCCATTCCTGGAAGTTTCTCTGG
NONE
OsAffx.4937.1.S1_x_at--638--3593Chr12:8683536..8683560 (25 bp)
CATTCCTGGAAGTTTCTCTGGCCTT
NONE
Target Sequence 
TCGACACATATAAAGCCCTTTCTAATTATATCTGTTCAAAACAATTTCAGCCAGCTTGACAACAATAATTTCTCAGGAAC
CTCAATTCCTTCATCTTATGCCAATATCACCACACTTTTGAAATTGAGTTTGAGGAACTGCAGCTTGGAAGGACCTGTCC
CTGATGTCAGTGGAATAGCCCAACTTGGCTATTTAGATCTTTCTCACAATCTTCTAAACGGATCCATTCCTGGAAGTTTC
TCTGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4937.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis