Browse Element(s) Details


Os.15864.1.S1_s_at

Description gb:AK058375.1
DB_XREF= gi:32968393
TID=Os.15864.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G10, full insert sequence.
FL= gb:AK058375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7295011/11expressed protein
LOC_Os10g398201/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010258biological_processNADH dehydrogenase complex (plastoquinone) assembly
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15864.1.S1_s_at--1105--4551Chr01:42639257..42639281 (25 bp)
GCGCCGGCGCCGAAGAAGATCCTCA
LOC_Os01g72950
Os.15864.1.S1_s_at--536--9711Chr01:42639279..42639302 (24 bp)
TCAAGAAGAAACCTGTCTACTCGAT
LOC_Os01g72950
Os.15864.1.S1_s_at--121--10391Chr01:42640204..42640228 (25 bp)
TTTTCAGTTGTTTTCTTCCCTGCAT
LOC_Os01g72950
Os.15864.1.S1_s_at--1108--10792Chr01:42640211..42640235 (25 bp)
TTGTTTTCTTCCCTGCATTGCAGAT
LOC_Os01g72950
Os.15864.1.S1_s_at--108--9071Chr01:42640224..42640248 (25 bp)
TGCATTGCAGATTCTTCCCCTATTT
LOC_Os01g72950
Os.15864.1.S1_s_at--502--3431Chr01:42640231..42640255 (25 bp)
CAGATTCTTCCCCTATTTCGGTTCT
LOC_Os01g72950
Os.15864.1.S1_s_at--509--10551Chr01:42640252..42640276 (25 bp)
TTCTTCCGACGATTAATCTGCAGAT
LOC_Os01g72950
Os.15864.1.S1_s_at--821--9631Chr01:42640281..42640305 (25 bp)
TCAGTCGGTTCGTGATATATGACAA
LOC_Os01g72950
Os.15864.1.S1_s_at--342--711Chr01:42640328..42640352 (25 bp)
ATGAGGCGATTTGCTGTTGCCTGTT
LOC_Os01g72950
Os.15864.1.S1_s_at--540--8811Chr01:42640342..42640366 (25 bp)
TGTTGCCTGTTGCTCCGCATCTAAA
LOC_Os01g72950
Os.15864.1.S1_s_at--601--6671Chr01:42640350..42640374 (25 bp)
GTTGCTCCGCATCTAAATTAATTAT
LOC_Os01g72950
Target Sequence 
GCGCCGGCGCCGAAGAAGATCCTCAAGAAGAAACCTGTCTACTCGATGAAGAAGGGCCAGATTGTGCGCGTCGACAAGGA
GAAGTACTTGAACAGCATCAACTATCTGTCAGTTGGACACCCGCCTTTCTTCAAGGGGCTAGACTACATATACGAGGACC
GTGGCGAGGTTTTGGACATCAGAATCTTTGAAACAGGGGAGTATGCCCTGATCGCTTGGGTTGGAATCCCAACTCCACCG
GCATGGCTGCCAACTTACATGCTCATCAAGTCGGATAAACTCGACTACGAGAGAATATGATATGCACAGGATCGAAGGTT
GCGTTCAAGCTAGCTCAGCAATCGGGTGGGAGATCGGTCCTTGGCCTGCCAGACTAGCGTNTTTTCAGTTGTTTTCTTCC
CTGCATTGCAGATTCTTCCCCTATTTCGGTTCTTCCGACGATTAATCTGCAGATGTNTTCAGTCGGTTCGTGATATATGA
CAATGTGTNGTATATAGATGTCAATATGAGGCGATTTGCTGTTGCCTGTTGCTCCGCATCTAAATTAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15864.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis