Browse Element(s) Details


Os.43014.1.S1_at

Description gb:CA765048
DB_XREF= gi:27546896
DB_XREF=AF53-Rpf_05_P02_T7_015.ab1
CLONE=C0001898
TID=Os.43014.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) selenium-binding protein-like (P0401G10.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7293011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43014.1.S1_at--869--8611Chr01:42626310..42626334 (25 bp)
TGGTGACAAGTCTCATCCAGAGAGC
LOC_Os01g72930
Os.43014.1.S1_at--816--6611Chr01:42626382..42626406 (25 bp)
GTTGGCGACCACTGATACTGAAATC
LOC_Os01g72930
Os.43014.1.S1_at--389--10691Chr01:42626476..42626500 (25 bp)
TTGCCTCAGTCAGCACCTATAAGAG
LOC_Os01g72930
Os.43014.1.S1_at--144--6871Chr01:42626518..42626542 (25 bp)
GTTTGTCGTGATTGCCACTCAACAA
LOC_Os01g72930
Os.43014.1.S1_at--912--10751Chr01:42626581..42626605 (25 bp)
TTGAGAGATCCAATTCGCTTCCATC
LOC_Os01g72930
Os.43014.1.S1_at--827--3171Chr01:42626591..42626615 (25 bp)
CAATTCGCTTCCATCACTTTAGAGA
LOC_Os01g72930
Os.43014.1.S1_at--1014--3511Chr01:42626621..42626645 (25 bp)
CATGTTCTTGCGCTGATTATTGGTA
LOC_Os01g72930
Os.43014.1.S1_at--665--7931Chr01:42626679..42626703 (25 bp)
GGATTTTGTACTTTTCAGGCTGCCC
LOC_Os01g72930
Os.43014.1.S1_at--19--10531Chr01:42626692..42626716 (25 bp)
TTCAGGCTGCCCCAGTAAGGAAATG
LOC_Os01g72930
Os.43014.1.S1_at--504--7851Chr01:42626761..42626785 (25 bp)
GGTATCTGTCTTGGTTTCTGGAAAG
LOC_Os01g72930
Os.43014.1.S1_at--719--3611Chr01:42626812..42626836 (25 bp)
CTTGGGATCTACTTGACAACATGGA
LOC_Os01g72930
Target Sequence 
TGGTGACAAGTCTCATCCAGAGAGCAGTGCAATATACACAAAACTGGAAGAGATGCTTTCCAGGATCGAGAAGTTGGCGA
CCACTGATACTGAAATCTCTAAAAGGGAGCAAAATCTGATGAATTGCCATAGTGAAAAACTAGCTGTGGCATTAGGNATG
ATTCACTTGCCTCAGTCAGCACCTATAAGAGTAATGAAGAATCTGAGAGTTTGTCGTGATTGCCACTCAACAATGAAACT
GATATCAAAGAGTGAAAACAGAGAGATCATATTGAGAGATCCAATTCGCTTCCATCACTTTAGAGATGGTTCATGTTCTT
GCGCTGATTATTGGTAGTGACCCATACAATGGTTTATAAAGGAATTATTGGATTTTGTACTTTTCAGGCTGCCCCAGTAA
GGAAATGGGACACTTGGGAAGCGTTGAATATGTTCAGAAGAGATGCTAATTGGTATCTGTCTTGGTTTCTGGAAAGAGGG
CAATCAGCATAAACAATTATTTNCTTGGGATCTACTTGACAACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis