Browse Element(s) Details


Os.27963.1.A1_at

Description gb:AK063053.1
DB_XREF= gi:32973071
TID=Os.27963.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fruit-ripening protein (P0401G10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F01, full insert sequence.
FL= gb:AK063053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7290011/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27963.1.A1_at--640--6931Chr01:42608767..42608791 (25 bp)
GTAGTCGTTCACAGTTAGCATATCA
LOC_Os01g72900
Os.27963.1.A1_at--46--351Chr01:42608735..42608759 (25 bp)
ATAAACTTGACCTTGGCTCGATCGT
LOC_Os01g72900
Os.27963.1.A1_at--1138--8471Chr01:42608722..42608746 (25 bp)
TGGCTCGATCGTACAATCCATCACA
LOC_Os01g72900
Os.27963.1.A1_at--170--4971Chr01:42608427..42608582 (25 bp)
GCATACGCCATGCACGAGAAGCACA
LOC_Os01g72900
Os.27963.1.A1_at--544--4431Chr01:42608316..42608340 (25 bp)
GCCATCCACGAGCATCACAAGAAGA
LOC_Os01g72900
Os.27963.1.A1_at--450--871Chr01:42608276..42608300 (25 bp)
ATGGCCATCACCATTAGCTACCTAC
LOC_Os01g72900
Os.27963.1.A1_at--1106--9951Chr01:42608254..42608278 (25 bp)
TACCCTATCACTACTTACTGGACTA
LOC_Os01g72900
Os.27963.1.A1_at--443--6551Chr01:42608213..42608237 (25 bp)
GATTATTACCATGCATGTACTCTTA
LOC_Os01g72900
Os.27963.1.A1_at--813--6991Chr01:42608197..42608221 (25 bp)
GTACTCTTAGCTAGCATATCGGCTG
LOC_Os01g72900
Os.27963.1.A1_at--652--251Chr01:42608182..42608206 (25 bp)
ATATCGGCTGTATTTTTGTCGACGG
LOC_Os01g72900
Os.27963.1.A1_at--1144--7211Chr01:42608165..42608189 (25 bp)
GTCGACGGATACATGTACATCATCT
LOC_Os01g72900
Target Sequence 
GTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGACCTTGGCTCGATCGTACAATCCATCACAACTAAAGATA
GTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCA
CCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGA
AGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTC
GCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTAC
TGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGA
TACATGTACATCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27963.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis