Browse Element(s) Details


Os.48288.1.S1_at

Description gb:AK059634.1
DB_XREF= gi:32969652
TID=Os.48288.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A07, full insert sequence.
FL= gb:AK059634.1 gb:AK103121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7287011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48288.1.S1_at--19--8451Chr01:42592529..42592653 (25 bp)
GGCCATCTCTTATGGTACCATACGA
LOC_Os01g72870
Os.48288.1.S1_at--687--4051Chr01:42592507..42592531 (25 bp)
CGATGCGTAATGTTCTCTTCATGGC
LOC_Os01g72870
Os.48288.1.S1_at--966--7891Chr01:42592096..42592120 (25 bp)
GGTTGCCTTGTCTGTCGAAACTGAA
LOC_Os01g72870
Os.48288.1.S1_at--790--1971Chr01:42592077..42592101 (25 bp)
ACTGAAGGCCATACACACGGCTATT
LOC_Os01g72870
Os.48288.1.S1_at--705--71Chr01:42592055..42592079 (25 bp)
ATTGCTGCACGGAAGCTGGATCGTT
LOC_Os01g72870
Os.48288.1.S1_at--1012--1611Chr01:42592042..42592066 (25 bp)
AGCTGGATCGTTTTGGGCTGCAGAC
LOC_Os01g72870
Os.48288.1.S1_at--1123--7571Chr01:42592028..42592052 (25 bp)
GGGCTGCAGACTACGTGGCTAATTT
LOC_Os01g72870
Os.48288.1.S1_at--605--2231Chr01:42591967..42591991 (25 bp)
AAATTGTACCGTAGTCAGACTCAGT
LOC_Os01g72870
Os.48288.1.S1_at--653--9651Chr01:42591953..42591977 (25 bp)
TCAGACTCAGTATTTTTATCCTCCA
LOC_Os01g72870
Os.48288.1.S1_at--930--2351Chr01:42591902..42591926 (25 bp)
AAACCGGTTGGATCAACCTCATCAA
LOC_Os01g72870
Os.48288.1.S1_at--780--3131Chr01:42591872..42591896 (25 bp)
AATTCACAATCGTCGTTTGGCCTGG
LOC_Os01g72870
Target Sequence 
GGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACC
GGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCAC
ACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGC
ACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAANTCAAGATGA
AAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCA
ACCTCATCAATCACAAATTCACAATCGTCGTTTGGCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis