Browse Element(s) Details


Os.6252.1.S1_at

Description gb:AK072960.1
DB_XREF= gi:32982983
TID=Os.6252.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to RNA-binding protein (OJ1294_F06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150K08, full insert sequence.
FL= gb:AK072960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7283411/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6252.1.S1_at--245--10391Chr01:42581530..42581554 (25 bp)
TTTTGTTGTGCCTTGTACCTCTTAA
LOC_Os01g72834
Os.6252.1.S1_at--413--7851Chr01:42581583..42581607 (25 bp)
GGTAGAGTCGCTGCTGATTTTTCAT
LOC_Os01g72834
Os.6252.1.S1_at--1043--9811Chr01:42581744..42581768 (25 bp)
TACACTAACTAGGTCAGGGTCCCTT
LOC_Os01g72834
Os.6252.1.S1_at--440--6371Chr01:42581771..42581795 (25 bp)
GATCCATTCTCTATTCGATCTGGTC
LOC_Os01g72834
Os.6252.1.S1_at--425--4051Chr01:42581786..42581810 (25 bp)
CGATCTGGTCCTTCATTTCTGGTTT
LOC_Os01g72834
Os.6252.1.S1_at--334--10311Chr01:42581801..42581825 (25 bp)
TTTCTGGTTTTCTTCCATCTCACTC
LOC_Os01g72834
Os.6252.1.S1_at--727--451Chr01:42581817..42581841 (25 bp)
ATCTCACTCGTTATGTATCACCATC
LOC_Os01g72834
Os.6252.1.S1_at--710--9771Chr01:42581892..42581916 (25 bp)
TAAGGTCAAGCAGGCCCAAGAAATC
LOC_Os01g72834
Os.6252.1.S1_at--155--8191Chr01:42581932..42581956 (25 bp)
GGAAGCCATTACCAGACATATTATT
LOC_Os01g72834
Os.6252.1.S1_at--396--6071Chr01:42581963..42581987 (25 bp)
GAGTTCTCCAAATCTCCAATTAGTA
LOC_Os01g72834
Os.6252.1.S1_at--48--9991Chr01:42582039..42582063 (25 bp)
TACCACGTACGCTTATCTTTCAGTA
LOC_Os01g72834
Target Sequence 
TTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATAT
GCAGCTTTAGTTCAAGATGTCNCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAG
TACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTT
CGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTT
CACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTG
ATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTA
TATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis