Browse Element(s) Details


Os.14473.1.S1_a_at

Description gb:AK103469.1
DB_XREF= gi:32988678
TID=Os.14473.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cell division cycle 2-like protein kinase 5,Cholinesterase-related cell division controller (OJ1294_F06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130A03, full insert sequence.
FL= gb:AK103469.1 gb:AK109352.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7279011/11Cell division cycle 2-related protein kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14473.1.S1_a_at--464--9771Chr01:42558874..42558898 (25 bp)
TAATGCACCACCTGTGGCAGCTGGC
LOC_Os01g72790
Os.14473.1.S1_a_at--865--1611Chr01:42558892..42558916 (25 bp)
AGCTGGCCCAAGTCATCACTATGCA
LOC_Os01g72790
Os.14473.1.S1_a_at--210--9691Chr01:42558907..42558931 (25 bp)
TCACTATGCAAAGCCGCGAGGACCT
LOC_Os01g72790
Os.14473.1.S1_a_at--907--7471Chr01:42558931..42558955 (25 bp)
TGGAGGCCCTAATAGGTACCCACAA
LOC_Os01g72790
Os.14473.1.S1_a_at--522--991Chr01:42558967..42558991 (25 bp)
AGGAGGCTACAATCCGAACCGCGGT
LOC_Os01g72790
Os.14473.1.S1_a_at--495--6131Chr01:42559012..42559036 (25 bp)
GAGTGGCCCATATCCACAGCAAGGA
LOC_Os01g72790
Os.14473.1.S1_a_at--908--2491Chr01:42559134..42559158 (25 bp)
AACAGGGTGGACCTTATGGTGCATC
LOC_Os01g72790
Os.14473.1.S1_a_at--725--10111Chr01:42559148..42559172 (25 bp)
TATGGTGCATCTGGTCCAGGTCGAG
LOC_Os01g72790
Os.14473.1.S1_a_at--496--7211Chr01:42559167..42559191 (25 bp)
GTCGAGGCCCGAACTATAATCAAGG
LOC_Os01g72790
Os.14473.1.S1_a_at--849--7731Chr01:42559190..42559214 (25 bp)
GGTGGTTCTCGCAATCAACAACAGT
LOC_Os01g72790
Os.14473.1.S1_a_at--102--2571Chr01:42559220..42559244 (25 bp)
AACTGGCAATAGCACGGCGGTATCA
LOC_Os01g72790
Target Sequence 
TAATGCACCACCTGTGGCAGCTGGCCCAAGTCATCACTATGCAAAGCCGCGAGGACCTGGAGGCCCTAATAGGTACCCAC
AAGGCGGGAACCAAGGAGGCTACAATCCGAACCGCGGTGGACAGGGAGGAGGCTATGGGAGTGGCCCATATCCACAGCAA
GGACGAGGTCCTCCCCCTTATCCTGGTGGTGGCATGGGCGGAGCCGGTGGTCCGAGGGGTGGTGGTGGCAGTGGCTATGG
TGTTGGCGGACCAAATTATCAACAGGGTGGACCTTATGGTGCATCTGGTCCAGGTCGAGGCCCGAACTATAATCAAGGTG
GTTCTCGCAATCAACAACAGTATGGAAACTGGCAATAGCACGGCGGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14473.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis