Browse Element(s) Details


Os.26898.1.S1_at

Description gb:AK068334.1
DB_XREF= gi:32978352
TID=Os.26898.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.15 (OJ1294_F06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149L02, full insert sequence.
FL= gb:AK068334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7278011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26898.1.S1_at--334--1451Chr01:42554419..42554443 (25 bp)
AGAAGCCTAGAACTGCAGCAACAAC
LOC_Os01g72780
Os.26898.1.S1_at--1099--10771Chr01:42554500..42554524 (25 bp)
TTGTTAGCCTCATATCTTTCACCGG
LOC_Os01g72780
Os.26898.1.S1_at--200--3351Chr01:42554519..42554543 (25 bp)
CACCGGCAAGGTCAGGTCCTTTAGT
LOC_Os01g72780
Os.26898.1.S1_at--1048--1011Chr01:42554532..42554556 (25 bp)
AGGTCCTTTAGTTGAGTCCATGCCG
LOC_Os01g72780
Os.26898.1.S1_at--857--9212Chr01:42554548..42554572 (25 bp)
TCCATGCCGGGACCTTGAAATTTGC
LOC_Os01g72780
Os.26898.1.S1_at--649--3671Chr01:42554587..42554611 (25 bp)
CTTTAGGACTTTTGAGAACTGCGAT
LOC_Os01g72780
Os.26898.1.S1_at--136--1991Chr01:42554604..42554628 (25 bp)
ACTGCGATAGAGAAGGTAGCTGGCT
LOC_Os01g72780
Os.26898.1.S1_at--316--1371Chr01:42554717..42554741 (25 bp)
AGAGCAGTGGTGTCGATTGAGAATC
LOC_Os01g72780
Os.26898.1.S1_at--623--9951Chr01:42554839..42554863 (25 bp)
TACGCAGGTGAAATTTTGACTTGTT
LOC_Os01g72780
Os.26898.1.S1_at--908--6851Chr01:42554861..42554885 (25 bp)
GTTTGTTTCAGTCATCCACAAGCCG
LOC_Os01g72780
Os.26898.1.S1_at--103--2671Chr01:42554880..42554904 (25 bp)
AAGCCGGACAATATGCTGTCATTTG
LOC_Os01g72780
Target Sequence 
AGAAGCCTAGAACTGCAGCAACAACATGAAAGCCAAGGCTGTCATTTGCNCCATCCAGCTATCAAGCTGCATAAACGCTT
NTTGTTAGCCTCATATCTTTCACCGGCAAGGTCAGGTCCTTTAGTTGAGTCCATGCCGGGACCTTGAAATTTGCATGCNC
CTTGATTCCTTTAGGACTTTTGAGAACTGCGATAGAGAAGGTAGCTGGCTAAAAGGAGCAATTNTTCAGGGAATNTGCGT
CAGTTAAAAGGAGCAAATNTTCACTTCAGGGAATGCGCNCTGTNTGCGTTAGTAAAAGAGAGCAGTGGTGTCGATTGAGA
ATCCNCCTAGTTGTACATTAAAATTTTGACTTGTGGGTGGATTGAATCATACGAAACTATTGATNTAGGGGGCATCCCTT
CAGTGTTGTATTANAANTTATACGCAGGTGAAATTTTGACTTGTTTGTTTCAGTCATCCACAAGCCGGACAATATGCTGT
CATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis