Browse Element(s) Details


OsAffx.11834.1.S1_s_at

Description gb:NM_189328.1
DB_XREF= gi:34905739
GEN=OJ1294_F06.11
TID=OsAffx.11834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1294_F06.11 (OJ1294_F06.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11834.1.S1_s_at--774--7791Chr01:42529682..42529706 (25 bp)
GGTCCAGGACCATCTGAAGGCGATG
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--320--671Chr01:42529774..42529798 (25 bp)
ATGAAGAGCTCCTTAGCATCCTACT
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--909--9991Chr01:42529787..42529811 (25 bp)
TAGCATCCTACTGAGGTTTCAGAGG
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--837--7991Chr01:42530577..42530601 (25 bp)
GGATGTTCCCAGATTTCATATTTGC
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--1038--191Chr01:42530596..42530620 (25 bp)
ATTTGCACAATTTAACATCGAGATT
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--540--4071Chr01:42530614..42530638 (25 bp)
CGAGATTGCACTCGCAAACCTTCTA
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--682--9311Chr01:42530625..42530649 (25 bp)
TCGCAAACCTTCTATACCATTTCGA
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--106--311Chr01:42530638..42530662 (25 bp)
ATACCATTTCGATTGGGAATTGCCA
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--1011--8211Chr01:42530653..42530677 (25 bp)
GGAATTGCCATGTAGTGAAAACCGA
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--565--1791Chr01:42530673..42530697 (25 bp)
ACCGAATGGAGTTGGATATGACTGA
LOC_Os01g72730
OsAffx.11834.1.S1_s_at--69--271Chr01:42530688..42530712 (25 bp)
ATATGACTGAGTCCGCTGGGTTGAC
LOC_Os01g72730
Target Sequence 
GGTCCAGGACCATCTGAAGGCGATGGAGGAGCGCAGAGAGGAAGTCGCAGATGGCGTCGTCGACGACGGCGACGGCGACG
GCGCCGATAGGGATGAAGAGCTCCTTAGCATCCTACTGAGGTTTCAGAGGGATGGGATGAGCGATGCTGGGAAGATGCGG
AGGATTTTTGACCTGAGAGGTTTGAACATGACGATACCGATTATAATGTTTCTTTCAGGTGGTTTTGGTCGAAGGATGTT
CCCAGATTTCATATTTGCACAATTTAACATCGAGATTGCACTCGCAAACCTTCTATACCATTTCGATTGGGAATTGCCAT
GTAGTGAAAACCGAATGGAGTTGGATATGACTGAGTCCGCTGGGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11834.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis