Browse Element(s) Details


Os.53589.1.S1_at

Description gb:AK073433.1
DB_XREF= gi:32983456
TID=Os.53589.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042P17, full insert sequence.
FL= gb:AK073433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7271011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53589.1.S1_at--772--2031Chr01:42520483..42520507 (25 bp)
ACTATGCCAGGTGGGTAGGCGTACA
LOC_Os01g72710
Os.53589.1.S1_at--986--6191Chr01:42520521..42520545 (25 bp)
GAGGCCTAATGTTGGCATACCGTAA
LOC_Os01g72710
Os.53589.1.S1_at--1092--731Chr01:42520557..42520581 (25 bp)
ATGTATTCTACAACGTCACGACATT
LOC_Os01g72710
Os.53589.1.S1_at--1112--3331Chr01:42520573..42520597 (25 bp)
CACGACATTCTTCTCTTCATAGGGA
LOC_Os01g72710
Os.53589.1.S1_at--355--3211Chr01:42520590..42520614 (25 bp)
CATAGGGAACATCTTTACTGGTAAA
LOC_Os01g72710
Os.53589.1.S1_at--1106--6491Chr01:42520622..42520646 (25 bp)
GATAGGCATCTCCATATGTCGAATT
LOC_Os01g72710
Os.53589.1.S1_at--685--7211Chr01:42520639..42520663 (25 bp)
GTCGAATTCATATCAACAGTGTCAC
LOC_Os01g72710
Os.53589.1.S1_at--763--2111Chr01:42520654..42520678 (25 bp)
ACAGTGTCACCGTATTTTTCTTCAT
LOC_Os01g72710
Os.53589.1.S1_at--1060--173Chr01:42520667..42520691 (25 bp)
ATTTTTCTTCATAGCCTGCAACTTG
LOC_Os01g72710
Os.53589.1.S1_at--346--4471Chr01:42520680..42520704 (25 bp)
GCCTGCAACTTGTAAGACTTGTCTT
LOC_Os01g72710
Os.53589.1.S1_at--379--2751Chr01:42520693..42520717 (25 bp)
AAGACTTGTCTTTGTAATATACGAG
LOC_Os01g72710
Target Sequence 
ACTATGCCAGGTGGGTAGGCGTACAAAAGGTTCAAGAAGAGGCCTAATGTTGGCATACCGTAAGTTACTACGATATGTAT
TCTACAACGTCACGACATTCTTCTCTTCATAGGGAACATCTTTACTGGTAAAGGCAGAAGATAGGCATCTCCATATGTCG
AATTCATATCAACAGTGTCACCGTATTTTTCTTCATAGCCTGCAACTTGTAAGACTTGTCTTTGTAATATACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis