Browse Element(s) Details


OsAffx.9749.1.S1_at

Description gb:NM_189330.1
DB_XREF= gi:34905743
GEN=OJ1294_F06.14
TID=OsAffx.9749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OJ1294_F06.14), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7276011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9749.1.S1_at--1098--2811Chr01:42539939..42539963 (25 bp)
AAGTATGAGATTCGGCAAGTCCTTC
LOC_Os01g72760
OsAffx.9749.1.S1_at--399--911Chr01:42539985..42540009 (25 bp)
AGGCGGACATTGAAGGCCGACTCCA
LOC_Os01g72760
OsAffx.9749.1.S1_at--239--5711Chr01:42540003..42540027 (25 bp)
GACTCCACTATCTGCAGCTGGTTAT
LOC_Os01g72760
OsAffx.9749.1.S1_at--406--7791Chr01:42540055..42540079 (25 bp)
GGTGCCAATTGTTATACCCAGATTA
LOC_Os01g72760
OsAffx.9749.1.S1_at--587--311Chr01:42540116..42540140 (25 bp)
ATACCTCAAGGTACTTCGGTGCTGG
LOC_Os01g72760
OsAffx.9749.1.S1_at--963--10211Chr01:42540253..42540277 (25 bp)
TATTCCTGGTGGTTCTGGTCGAAGG
LOC_Os01g72760
OsAffx.9749.1.S1_at--408--5311Chr01:42540273..42540297 (25 bp)
GAAGGATGCGCCCAGGTTTAACATT
LOC_Os01g72760
OsAffx.9749.1.S1_at--706--10091Chr01:42540401..42540425 (25 bp)
TATGGGCTCACTACACGTCGTAGAT
LOC_Os01g72760
OsAffx.9749.1.S1_at--368--7211Chr01:42540417..42540441 (25 bp)
GTCGTAGATCTGACCTTTTACTCAA
LOC_Os01g72760
OsAffx.9749.1.S1_at--129--2711Chr01:42540441..42540465 (25 bp)
AAGCTACTCCTTCCTATGCACGATT
LOC_Os01g72760
OsAffx.9749.1.S1_at--313--651Chr01:42540456..42540480 (25 bp)
ATGCACGATTGGGTTGGTCCACCAA
LOC_Os01g72760
Target Sequence 
AAGTATGAGATTCGGCAAGTCCTTCAAGGTAAAGCCATGGTTAGTGAGGCGGACATTGAAGGCCGACTCCACTATCTGCA
GCTGGTTATCAAAGAAACTCTTAGGCTGCATCCTCCGGTGCCAATTGTTATACCCAGATTATGCTCTAAACCGAATAGTA
AGATTATGGGGTATGATATACCTCAAGGTACTTCGGTGCTGGTGAATGTATCAGCTATTGGAAGAGATGAGAAGATTTGG
AAAGATGTAAATGAGTTTAGGCCTGAACGATTTAAAGATGATATTGTTGATTTTAGTGGTACGGATTTTAGGTTTATTCC
TGGTGGTTCTGGTCGAAGGATGCGCCCAGGTTTAACATTTGGAGTATCCAATATTGAGATAGCACTTGTAACCCTTCTAT
ACCATTTTGATTGGAAGTTGCCTAGTGAAACAGACACACATGAGCTAGATATGAGAGAAACCTATGGGCTCACTACACGT
CGTAGATCTGACCTTTTACTCAAAGCTACTCCTTCCTATGCACGATTGGGTTGGTCCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis