Browse Element(s) Details


Os.25239.1.S1_a_at

Description gb:AK058574.1
DB_XREF= gi:32968592
TID=Os.25239.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.25239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative signal recognition particle receptor (OJ1294_F06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E11, full insert sequence.
FL= gb:AK109369.2 gb:AK058574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7280011/11signal recognition particle-docking protein FtsY containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006617biological_processSRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0005737cellular_componentcytoplasm
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0005048molecular_functionsignal sequence binding
GO:0005525molecular_functionGTP binding
GO:0008312molecular_function7S RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25239.1.S1_a_at--803--3551Chr01:42562433..42562453 (21 bp)
CATCAGTTCTCTCGCAGGCAGTGAA
LOC_Os01g72800
Os.25239.1.S1_a_at--175--8851Chr01:42562387..42562411 (25 bp)
TGATCTTGTTCTTTGCGACACGTCA
LOC_Os01g72800
Os.25239.1.S1_a_at--1024--2831Chr01:42562216..42562240 (25 bp)
AAGTCATAGCTAAAGCCCTTCCGGG
LOC_Os01g72800
Os.25239.1.S1_a_at--65--10671Chr01:42562035..42562222 (25 bp)
TTCCGGGTGCTCCTAATGAGATCTT
LOC_Os01g72800
Os.25239.1.S1_a_at--851--10591Chr01:42562005..42562029 (25 bp)
TTCTGGATGGCACGACTGGCTTGAA
LOC_Os01g72800
Os.25239.1.S1_a_at--1041--7911Chr01:42561845..42561869 (25 bp)
GGATTCGTCCTAACAAAGCTTGATG
LOC_Os01g72800
Os.25239.1.S1_a_at--197--6671Chr01:42561618..42561642 (25 bp)
GTTGAAGCCATTTTTCCTTGAGCTA
LOC_Os01g72800
Os.25239.1.S1_a_at--295--1571Chr01:42561598..42561622 (25 bp)
AGCTAGGACGCTTTGTTTTTTGAGA
LOC_Os01g72800
Os.25239.1.S1_a_at--254--5931Chr01:42561550..42561574 (25 bp)
GAGCATGTTTGCTTACTTGTACATC
LOC_Os01g72800
Os.25239.1.S1_a_at--328--10611Chr01:42561524..42561548 (25 bp)
TTCTGGTTTTTCACTCCTGTGACAA
LOC_Os01g72800
Os.25239.1.S1_a_at--560--2031Chr01:42561495..42561519 (25 bp)
ACTATGTGTCCATCCTTTCATGTAA
LOC_Os01g72800
Target Sequence 
CATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTT
CATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGA
GATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCA
CAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCA
GTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCC
TTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTC
TGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25239.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis