Browse Element(s) Details


Os.18006.1.S1_a_at

Description gb:AK107370.1
DB_XREF= gi:32992579
TID=Os.18006.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase-like (OJ1294_F06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B03, full insert sequence.
FL= gb:AK107370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7281011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18006.1.S1_a_at--220--4032Chr01:42566684..42566708 (25 bp)
CGTACGGCGTGTGCACGGACATGCA
LOC_Os01g72810
Os.18006.1.S1_a_at--827--1931Chr01:42566698..42566722 (25 bp)
ACGGACATGCAGTGCAGCTGCCCCG
LOC_Os01g72810
Os.18006.1.S1_a_at--1161--9151Chr01:42566843..42566867 (25 bp)
TGCGCGACACGGCCTACTTCAACAG
LOC_Os01g72810
Os.18006.1.S1_a_at--389--911Chr01:42566906..42566930 (25 bp)
AGGCGGCGTGCAAGGCAGCGTGCTT
LOC_Os01g72810
Os.18006.1.S1_a_at--575--10591Chr01:42566989..42567013 (25 bp)
TTCTGCTACCTGCAGTCGGAGGTGT
LOC_Os01g72810
Os.18006.1.S1_a_at--257--1771Chr01:42566996..42567020 (25 bp)
ACCTGCAGTCGGAGGTGTTGTCGCT
LOC_Os01g72810
Os.18006.1.S1_a_at--500--4051Chr01:42567026..42567050 (25 bp)
CGATGCAGCCGGAGGTGTTTCACTA
LOC_Os01g72810
Os.18006.1.S1_a_at--226--5071Chr01:42567030..42567054 (25 bp)
GCAGCCGGAGGTGTTTCACTACAAC
LOC_Os01g72810
Os.18006.1.S1_a_at--416--1051Chr01:42567038..42567062 (25 bp)
AGGTGTTTCACTACAACTCCTCCAT
LOC_Os01g72810
Os.18006.1.S1_a_at--386--2551Chr01:42567052..42567076 (25 bp)
AACTCCTCCATGCATATCAAGATTG
LOC_Os01g72810
Os.18006.1.S1_a_at--282--9051Chr01:42567062..42567086 (25 bp)
TGCATATCAAGATTGCCCAGGGCAG
LOC_Os01g72810
Target Sequence 
CGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCNAACTTCCGGGCGGTGGACTTCCGGCGGCCGAAC
CGCGGCTGCGTCCCGACGTNCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGGCTNGTGTNGC
TGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCATGNCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGC
AGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGC
AGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAG
GGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18006.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis