Browse Element(s) Details


Os.32046.3.S1_at

Description gb:AK106256.1
DB_XREF= gi:32991465
TID=Os.32046.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.20 (OJ1294_F06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E11, full insert sequence.
FL= gb:AK106256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7282011/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32046.3.S1_at--276--6211Chr01:42570745..42570769 (25 bp)
GAGGCTTCAAGGTAACAGGGTGATA
LOC_Os01g72820
Os.32046.3.S1_at--87--2131Chr01:42570759..42570783 (25 bp)
ACAGGGTGATACCTTGTGTGGCATC
LOC_Os01g72820
Os.32046.3.S1_at--524--6491Chr01:42570766..42570790 (25 bp)
GATACCTTGTGTGGCATCAACTCAT
LOC_Os01g72820
Os.32046.3.S1_at--77--1752Chr01:42570769..42570793 (25 bp)
ACCTTGTGTGGCATCAACTCATTTG
LOC_Os01g72820
Os.32046.3.S1_at--50--2551Chr01:42570784..42570808 (25 bp)
AACTCATTTGCTGACTACGAATTGT
LOC_Os01g72820
Os.32046.3.S1_at--620--4751Chr01:42570793..42570817 (25 bp)
GCTGACTACGAATTGTATTTTGCAT
LOC_Os01g72820
Os.32046.3.S1_at--247--8771Chr01:42570806..42570830 (25 bp)
TGTATTTTGCATCTGTCTAGACCCC
LOC_Os01g72820
Os.32046.3.S1_at--767--10391Chr01:42570810..42570834 (25 bp)
TTTTGCATCTGTCTAGACCCCTATT
LOC_Os01g72820
Os.32046.3.S1_at--196--3891Chr01:42570818..42570842 (25 bp)
CTGTCTAGACCCCTATTCTATACAT
LOC_Os01g72820
Os.32046.3.S1_at--192--5811Chr01:42570825..42570849 (25 bp)
GACCCCTATTCTATACATTTGGATT
LOC_Os01g72820
Os.32046.3.S1_at--366--3571Chr01:42570840..42570864 (25 bp)
CATTTGGATTTCTTGAACAGTTGAA
LOC_Os01g72820
Target Sequence 
GAGGCTTCAAGGTAACAGGGTGATACCTTGTGTGGCATCAACTCATTTGCTGACTACGAATTGTATTTTGCATCTGTCTA
GACCCCTATTCTATACATTTGGATTTCTTGAACAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32046.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis