Browse Element(s) Details


Os.19279.1.S1_at

Description gb:AK064908.1
DB_XREF= gi:32974926
TID=Os.19279.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0401G10.6 (P0401G10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M02, full insert sequence.
FL= gb:AK064908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7286011/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19279.1.S1_at--408--10171Chr01:42591538..42591562 (25 bp)
TATCATTCTGTTTTATGTGCAGCTA
LOC_Os01g72860
Os.19279.1.S1_at--1089--5051Chr01:42591556..42591580 (25 bp)
GCAGCTAACTGTGAGAACTCAGGTC
LOC_Os01g72860
Os.19279.1.S1_at--243--3891Chr01:42591564..42591588 (25 bp)
CTGTGAGAACTCAGGTCAAGGTTGT
LOC_Os01g72860
Os.19279.1.S1_at--655--7071Chr01:42591578..42591602 (25 bp)
GTCAAGGTTGTAGGATTTTCGTAGC
LOC_Os01g72860
Os.19279.1.S1_at--728--4951Chr01:42591601..42591625 (25 bp)
GCATTTGTAAGTGCTCTAGCAGCTT
LOC_Os01g72860
Os.19279.1.S1_at--876--10011Chr01:42591617..42591641 (25 bp)
TAGCAGCTTGAAGTCTTTCTCGTGT
LOC_Os01g72860
Os.19279.1.S1_at--585--5331Chr01:42591626..42591650 (25 bp)
GAAGTCTTTCTCGTGTACATTATAG
LOC_Os01g72860
Os.19279.1.S1_at--121--3791Chr01:42591635..42591659 (25 bp)
CTCGTGTACATTATAGTTTGCAAAC
LOC_Os01g72860
Os.19279.1.S1_at--1128--8991Chr01:42591679..42591703 (25 bp)
TGAAGTGAGATAATTTGTTGTACCA
LOC_Os01g72860
Os.19279.1.S1_at--664--571Chr01:42591703..42591727 (25 bp)
ATCCATCCCTTTGCAGCTATTTATG
LOC_Os01g72860
Os.19279.1.S1_at--398--4311Chr01:42591710..42591734 (25 bp)
CCTTTGCAGCTATTTATGTTGCCTG
LOC_Os01g72860
Target Sequence 
TATCATTCTGTTTTATGTGCAGCTAACTGTGAGAACTCAGGTCAAGGTTGTAGGATTTTCGTAGCATTTGTAAGTGCTCT
AGCAGCTTGAAGTCTTTCTCGTGTACATTATAGTTTGCAAACACAATGACANTTTGTTGAATGAAGTGAGATAATTTGTT
GTACCATCCATCCCTTTGCAGCTATTTATGTTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis