Browse Element(s) Details


Os.7372.1.S1_at

Description gb:AU100845
DB_XREF= gi:9865095
DB_XREF=AU100845
CLONE=C52494
TID=Os.7372.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.7372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative abscisic acid response protein (P0401G10.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7291011/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7372.1.S1_at--171--971Chr01:42609841..42609865 (25 bp)
AGGACGCCGGCGACTATCGCAAGGA
LOC_Os01g72910
Os.7372.1.S1_at--169--4971Chr01:42609924..42610079 (25 bp)
GCATACGCCATGCATGAGAAGAAGC
LOC_Os01g72910
Os.7372.1.S1_at--429--1511Chr01:42610098..42610122 (25 bp)
AGCACGCGCGGTCGCACAAGATGAA
LOC_Os01g72910
Os.7372.1.S1_at--267--9771Chr01:42610232..42610256 (25 bp)
TAATCCATCCCATCCATTCGTGCAT
LOC_Os01g72910
Os.7372.1.S1_at--826--571Chr01:42610243..42610267 (25 bp)
ATCCATTCGTGCATTGCTACCTTTA
LOC_Os01g72910
Os.7372.1.S1_at--897--4851Chr01:42610258..42610282 (25 bp)
GCTACCTTTAAGCATCTTGCATGTT
LOC_Os01g72910
Os.7372.1.S1_at--307--9051Chr01:42610275..42610299 (25 bp)
TGCATGTTGATGTCTCGTGTGTATA
LOC_Os01g72910
Os.7372.1.S1_at--409--6891Chr01:42610295..42610319 (25 bp)
GTATATATTATTAGCCCATCGAGAT
LOC_Os01g72910
Os.7372.1.S1_at--510--6051Chr01:42610315..42610339 (25 bp)
GAGATATATACCTCTCCGTCGTCAT
LOC_Os01g72910
Os.7372.1.S1_at--589--6711Chr01:42610375..42610399 (25 bp)
GTTCGTTAGTTTGTCATCGCTGAGT
LOC_Os01g72910
Os.7372.1.S1_at--231--9511Chr01:42610407..42610431 (25 bp)
TCTCGTTCTTGTAGTATAGTTTGTA
LOC_Os01g72910
Target Sequence 
AGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGCCNGC
CGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAGGAAGGGA
TCGCCGCCGCCGTCGCCGTCGGCAGCGCCGGATTCGCCCTCCACGAGCACCACGAGAAGAAGGAAGCCAAGAAGCACCGC
CGCCATGCCCACCACCNACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGTTGATGTCT
CGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCGTATGTGCTATATATGTGTATATACTTGT
TATTTGTTCGTTAGTTTGTCATCGCTGAGTGCATAGNTCTCGTTCTTGTAGTATAGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis