Browse Element(s) Details


OsAffx.13130.1.S1_at

Description tigr:9631.m02992
TID=OsAffx.13130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g729401/11Phosphatidylserine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0004609molecular_functionphosphatidylserine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13130.1.S1_at--445--9411NONE
TCGTCCATGGCGCAAGTGAGGAGGG
NONE
OsAffx.13130.1.S1_at--954--7491Chr03:17383435..17383459 (25 bp)
GTGGTGCGCGGTGGATGGCTCACAA
NONE
OsAffx.13130.1.S1_at--415--1691Chr03:17383627..17383651 (25 bp)
ACCACCCACGTCACTCGAAAGATAG
NONE
OsAffx.13130.1.S1_at--1029--1791Chr03:17383630..17383654 (25 bp)
ACCCACGTCACTCGAAAGATAGGAT
NONE
OsAffx.13130.1.S1_at--1037--3331Chr03:17383633..17383657 (25 bp)
CACGTCACTCGAAAGATAGGATGGA
NONE
OsAffx.13130.1.S1_at--826--8531Chr03:17383670..17383694 (25 bp)
TGGAGCCGGTCGAGCACAGTGACCA
NONE
OsAffx.13130.1.S1_at--278--5871Chr03:17383672..17383696 (25 bp)
GAGCCGGTCGAGCACAGTGACCACA
NONE
OsAffx.13130.1.S1_at--924--7791Chr03:17383677..17383701 (25 bp)
GGTCGAGCACAGTGACCACACCGTC
NONE
OsAffx.13130.1.S1_at--267--2131Chr03:17383694..17383718 (25 bp)
ACACCGTCGCCGCTCAAAAGGAGAT
NONE
OsAffx.13130.1.S1_at--1028--1771Chr03:17383696..17383720 (25 bp)
ACCGTCGCCGCTCAAAAGGAGATGA
NONE
OsAffx.13130.1.S1_at--960--9332Chr03:17383700..17383724 (25 bp)
TCGCCGCTCAAAAGGAGATGAGGTT
NONE
Target Sequence 
TCGTCCATGGCGCAAGTGAGGAGGGGTGGTGCGCGGTGGATGGCTCACAAGGAGGGGCGTGACGGCGACGCCACCACCCA
CGTCACTCGAAAGATAGGATGGAGAGGAGACGAGGTGGAGCCGGTCGAGCACAGTGACCACACCGTCGCCGCTCAAAAGG
AGATGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis