Browse Element(s) Details


Os.26898.2.S1_x_at

Description gb:NM_189331.1
DB_XREF= gi:34905745
GEN=OJ1294_F06.15
TID=Os.26898.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.15 (OJ1294_F06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1294_F06.15 (OJ1294_F06.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7278011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed
LOC_Os01g72780Os.26898.2.S1_x_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72780Os.26898.1.S1_at11/111+42543824..42554916HEAT repeat family protein, expressed
LOC_Os01g72790Os.14473.1.S1_a_at11/111+42556433..42559473Cell division cycle 2-related protein kinase 7, putative, expressed
LOC_Os01g72800Os.25239.1.S1_a_at11/111+42561433..42564306signal recognition particle-docking protein FtsY containing protein, expressed
LOC_Os01g72810Os.18006.1.S1_a_at11/111+42565659..42567268D-mannose binding lectin family protein, expressed
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26898.2.S1_x_at--1072--871Chr01:42543982..42544006 (25 bp)
AGGCCTTCTCGGGTGACGTCTGCGC
LOC_Os01g72780
Os.26898.2.S1_x_at--1001--311Chr01:42544077..42544101 (25 bp)
ATACGCTCCATTCTCGTCGACGACG
LOC_Os01g72780
Os.26898.2.S1_x_at--995--7291Chr01:42544332..42544356 (25 bp)
GTGCGCTCGGTGGTCAAGTCCCTTG
LOC_Os01g72780
Os.26898.2.S1_x_at--1133--7071Chr01:42544344..42544368 (25 bp)
GTCAAGTCCCTTGGCCATTTGGCTT
LOC_Os01g72780
Os.26898.2.S1_x_at--1027--3571Chr01:42544359..42544383 (25 bp)
CATTTGGCTTTCCATGTCGACGCTG
LOC_Os01g72780
Os.26898.2.S1_x_at--377--3512Chr12:23229054..23229077 (24 bp)
CATGTCGACGCTGCAGCCGATTGGG
NONE
Os.26898.2.S1_x_at--104--8331Chr01:42544395..42544419 (25 bp)
GGCTCTGTGGCCTCTCCTCTGGAGG
LOC_Os01g72780
Os.26898.2.S1_x_at--762--8551Chr01:42544414..42544438 (25 bp)
TGGAGGCTCTCCTTGCTGCTTCCGT
LOC_Os01g72780
Os.26898.2.S1_x_at--1086--9051Chr01:42544430..42544454 (25 bp)
TGCTTCCGTCGACCAGCGGGCCAAG
LOC_Os01g72780
Os.26898.2.S1_x_at--610--3391Chr01:42544443..42544819 (25 bp)
CAGCGGGCCAAGTCCACTTACAAGG
LOC_Os01g72780
Os.26898.2.S1_x_at--678--7271Chr01:42544806..42544830 (25 bp)
GTCCACTTACAAGGCATGTCTTGAA
LOC_Os01g72780
Target Sequence 
AGGCCTTCTCGGGTGACGTCTGCGCCGCCCTCACCGCGCGCTACGGCCGCTCCACCGCCCCGCAGCACCGCCACCTCCTC
GCCTCCGCCGCCGCCATACGCTCCATTCTCGTCGACGACGGCCTCCCCGTGACGCCAGCATCCTACCTCCCCGCCGCCAT
CTCGGCCCTCCAAGCCGCCGGCTCGGCTGACCCCGCCGCCGCTTCCGCCCTTGCCTCCCTCCTCGTCATCCTCCTGCCCA
ATATCCCCTCGTCCCCATCGTCTCTCCCGCCAGCGTCCGCCTCCGAATCTGCCTCAGCGCTCGCCGTCTTCCTCTCCTCG
CCCGATGCATCCCAGCTACCCACCGGCACCGTGCGCTCGGTGGTCAAGTCCCTTGGCCATTTGGCTTTCCATGTCGACGC
TGCAGCCGATTGGGGCTCTGTGGCCTCTCCTCTGGAGGCTCTCCTTGCTGCTTCCGTCGACCAGCGGGCCAAGTCCACTT
ACAAGGCATGTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26898.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis