Browse Element(s) Details


Os.43021.1.S1_at

Description gb:AK122121.1
DB_XREF= gi:37991767
TID=Os.43021.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.43021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase (OJ1294_F06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130J03, full insert sequence.
FL= gb:AK122121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7270011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g117601/11Polygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed
LOC_Os01g72749NANA1+42536541..42537087NA
LOC_Os01g72760OsAffx.9749.1.S1_at11/111+42538791..42540520Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004650molecular_functionpolygalacturonase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43021.1.S1_at--789--6251Chr01:42514126..42514150 (25 bp)
GATGGTGTGCACGTCGCAGATCCCA
LOC_Os01g72700
Os.43021.1.S1_at--592--9411Chr01:42514176..42514200 (25 bp)
TCGTCCAGATCCTGCAGGTCATCAA
LOC_Os01g72700
Os.43021.1.S1_at--332--9371Chr01:42514217..42514241 (25 bp)
TCGTCAGCCAGAATCGAAGCTTTCT
LOC_Os01g72700
Os.43021.1.S1_at--5--111Chr01:42514244..42514268 (25 bp)
ATTCTGATCGATCTGACGACGCCAC
LOC_Os01g72700
Os.43021.1.S1_at--744--3551Chr01:42514268..42514292 (25 bp)
CATCATTACTCCTACTAAACCACAG
LOC_Os01g72700
Os.43021.1.S1_at--988--3532Chr03:6131894..6132210 (25 bp)
CATCGAATCGATCACTTGCATTGCA
LOC_Os03g11760
Os.43021.1.S1_at--895--9051Chr01:42514344..42514368 (25 bp)
TGCATCCGCAAGTACTACGTGTTCC
LOC_Os01g72700
Os.43021.1.S1_at--637--9931Chr01:42514359..42514383 (25 bp)
TACGTGTTCCCTAGTGCAAAAATTG
LOC_Os01g72700
Os.43021.1.S1_at--333--2211Chr01:42514419..42514443 (25 bp)
ACAACTGTTCCTGCCGTGCTAATTT
LOC_Os01g72700
Os.43021.1.S1_at--849--10351Chr01:42514456..42514480 (25 bp)
TTTTTGTCTCTGCTTTTGGATGTCA
LOC_Os01g72700
Os.43021.1.S1_at--12--151Chr01:42514497..42514521 (25 bp)
ATTACGTGGTGCCTTGTTCGATCTA
LOC_Os01g72700
Target Sequence 
GATGGTGTGCACGTCGCAGATCCCATCCAACCGCCCGTCCATGGCCGAGGTCGTCCAGATCCTGCAGGTCATCAAGGCCC
CCGTCGCTGCATCGTCAGCCAGAATCGAAGCTTTCTGAATTCTGATCGATCTGACGACGCCACATCATTACTCCTACTAA
ACCACAGGGTTAATGATTCCAAATCATCGAATCGATCACTTGCATTGCATTGCATNNNNNGCATGCATCCGCAAGTACTA
CGTGTTCCCTAGTGCAAAAATTGAAAGGTCTGAGCAGTAGGCAGTAATAGTAGTACGTACAACTGTTCCTGCCGTGCTAA
TTTTCTNCAGGGTCTTTTTTTGTCTCTGCTTTTGGATGTCAGATAAATCTCATTATTATTACGTGGTGCCTTGTTCGATC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis