Browse Element(s) Details


Os.15212.1.A1_a_at

Description gb:AK111991.1
DB_XREF= gi:37988654
TID=Os.15212.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.15212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0401G10.22 (P0401G10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A10, full insert sequence.
FL= gb:AK111991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7299011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15212.1.A1_a_at--303--5471Chr01:42664764..42664788 (25 bp)
GAACTGCTGACAGGGATGCAACCTA
LOC_Os01g72990
Os.15212.1.A1_a_at--571--10731Chr01:42663598..42663622 (25 bp)
TTGACAGCCGGATGGGATCGTACCC
LOC_Os01g72990
Os.15212.1.A1_a_at--779--6371Chr01:42663583..42663607 (25 bp)
GATCGTACCCAGCAGAATGCGTGGA
LOC_Os01g72990
Os.15212.1.A1_a_at--1157--5331Chr01:42663558..42663582 (25 bp)
GAAGTTTGCTGCACTGGCACTGAGA
LOC_Os01g72990
Os.15212.1.A1_a_at--628--3331Chr01:42663541..42663565 (25 bp)
CACTGAGATGCTGCCGAGACGAGAC
LOC_Os01g72990
Os.15212.1.A1_a_at--263--711Chr01:42663468..42663492 (25 bp)
ATGGCAAATGACACCGGACACCGGG
LOC_Os01g72990
Os.15212.1.A1_a_at--791--2031Chr01:42663432..42663456 (25 bp)
ACTATCCTTGGAACCTAGCAACACA
LOC_Os01g72990
Os.15212.1.A1_a_at--171--391Chr01:42663346..42663370 (25 bp)
ATCACCATCACTACAACATGTCATC
LOC_Os01g72990
Os.15212.1.A1_a_at--773--1151Chr01:42663305..42663329 (25 bp)
AGTAACCTCCTCAGCGGTGTTGTAC
LOC_Os01g72990
Os.15212.1.A1_a_at--1095--4651Chr01:42663292..42663316 (25 bp)
GCGGTGTTGTACCTAGCATCAATCC
LOC_Os01g72990
Os.15212.1.A1_a_at--8--1551Chr01:42663278..42663302 (25 bp)
AGCATCAATCCTCGCTGAACATTAT
LOC_Os01g72990
Target Sequence 
GAACTGCTGACAGGGATGCAACCTATTTCTCATGGAAGAAATATAGTTAGAGAGGTTGTTGCGGCCAATCAGAGTGGGAT
GATATTGTCAGTGGTTGACAGCCGGATGGGATCGTACCCAGCAGAATGCGTGGAGAAGTTTGCTGCACTGGCACTGAGAT
GCTGCCGAGACGAGACGGACGCAAGGCCGTCCATAGTGGAGGTGATGAGGGAGCTGGAGAAGATATGGCAAATGACACCG
GACACCGGGAGCATGTCCTCACTATCCTTGGAACCTAGCAACACAGCCACCCCATCGTCGGGATCCAGGATGATGGTTTC
ATCGTCATCTGGGGTTGGAAATGATGATCACCATCACTACAACATGTCATCATCCGATGTCTCCGGCAGTAACCTCCTCA
GCGGTGTTGTACCTAGCATCAATCCTCGCTGAACATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15212.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis