Browse Element(s) Details


Os.8558.1.S1_at

Description gb:AK059641.1
DB_XREF= gi:32969659
TID=Os.8558.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B08, full insert sequence.
FL= gb:AK059641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g117704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8558.1.S1_at--71--7391Chr02:6078962..6078986 (25 bp)
GTGACCAGAAGCTGTCGGCCATGGA
LOC_Os02g11770
Os.8558.1.S1_at--695--2771Chr02:6078917..6078941 (25 bp)
AAGAGAAGGGCTTCCTCTATGCCTG
LOC_Os02g11770
Os.8558.1.S1_at--850--591Chr02:6078639..6078923 (25 bp)
ATGCCTGCTTGTTCATGCTGTGCTG
LOC_Os02g11770
Os.8558.1.S1_at--622--9111Chr02:6078607..6078631 (25 bp)
TGCTGCTACGAAACCTGCGAGCACT
LOC_Os02g11770
Os.8558.1.S1_at--516--6031Chr02:6078539..6078563 (25 bp)
GAGATCAAGATCGATTTCCTGGATT
NONE
Os.8558.1.S1_at--50--931Chr02:6078484..6078508 (25 bp)
AGGCTAGCTTGGTGTGATTCTTCTC
NONE
Os.8558.1.S1_at--502--6571Chr02:6078469..6078493 (25 bp)
GATTCTTCTCGGTTTTAATTTGTGT
NONE
Os.8558.1.S1_at--762--9811Chr02:6078442..6078466 (25 bp)
TAACTATGCGTTAACCGTGGTGAGC
NONE
Os.8558.1.S1_at--725--10051Chr02:6078410..6078434 (25 bp)
TAGTTATGTACTCCATGCTGTGACT
NONE
Os.8558.1.S1_at--521--7411Chr02:6078269..6078293 (25 bp)
GTGATTCATGTTGCAGTTATCCAGT
NONE
Os.8558.1.S1_at--296--10151Chr02:6078252..6078276 (25 bp)
TATCCAGTTATTTCTTCTGCTTGCA
NONE
Target Sequence 
GTGACCAGAAGCTGTCGGCCATGGAGCATGTCAAGAAACGCCATGAAGAGAAGGGCTTCCTCTATGCCTGCTTGTTCATG
CTGTGCTGCTGCTTCTGCTGCTACGAAACCTGCGAGCACTGCCTCGAGTGCTTCTGCTGCTGCTGCAAGAAGGACAACTG
ATAGAGATCAAGATCGATTTCCTGGATTTGTTAGCGAATTGTTCGTCGAAATAATAAAAGGCTAGCTTGGTGTGATTCTT
CTCGGTTTTAATTTGTGTGTTAACTATGCGTTAACCGTGGTGAGCTAGCTAATAGTTATGTACTCCATGCTGTGACTATG
AGTGAGCGAGTGAATTGCAGGTGGATTGTGGTTGTAAGTTTGTAAGCTGGATTTCTGATTTTTCATGTCAGTTCATTGTT
GTAGTACAAATTCTTGTGTAAACATAAGTGTAGGTGATTCATGTTGCAGTTATCCAGTTATTTCTTCTGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis